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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 298 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v4g:AB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    2 4v4g:AC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    3 4v4g:AD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    4 4v4g:AE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    5 4v4g:AF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    6 4v4g:AG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    7 4v4g:AH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    8 4v4g:AI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    9 4v4g:AJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    10 4v4g:AK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    11 4v4g:AL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    12 4v4g:AM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    13 4v4g:AM (11.5) BS02 rna N/A GO:0003676 ... N/A 15502846
    14 4v4g:AN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    15 4v4g:AO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    16 4v4g:AO (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    17 4v4g:AP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    18 4v4g:AQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    19 4v4g:AQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    20 4v4g:AR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    21 4v4g:AS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    22 4v4g:AT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    23 4v4g:AT (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    24 4v4g:Aa (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    25 4v4g:B1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    26 4v4g:B2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    27 4v4g:B3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    28 4v4g:B4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    29 4v4g:B5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    30 4v4g:B6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    31 4v4g:B7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    32 4v4g:BD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    33 4v4g:BD (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    34 4v4g:BE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    35 4v4g:BF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    36 4v4g:BG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    37 4v4g:BG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    38 4v4g:BH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    39 4v4g:BI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    40 4v4g:BJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    41 4v4g:BK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    42 4v4g:BL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    43 4v4g:BL (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    44 4v4g:BM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    45 4v4g:BN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    46 4v4g:BN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    47 4v4g:BO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    48 4v4g:BP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    49 4v4g:BP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    50 4v4g:BQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    51 4v4g:BQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    52 4v4g:BR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    53 4v4g:BS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    54 4v4g:BT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    55 4v4g:BU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    56 4v4g:BV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    57 4v4g:BW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    58 4v4g:BW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    59 4v4g:BX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    60 4v4g:BY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    61 4v4g:BZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    62 4v4g:CB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    63 4v4g:CC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    64 4v4g:CD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    65 4v4g:CE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    66 4v4g:CF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    67 4v4g:CG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    68 4v4g:CH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    69 4v4g:CI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    70 4v4g:CJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    71 4v4g:CK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    72 4v4g:CL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    73 4v4g:CM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    74 4v4g:CN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    75 4v4g:CO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    76 4v4g:CO (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    77 4v4g:CP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    78 4v4g:CQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    79 4v4g:CR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    80 4v4g:CS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    81 4v4g:CT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    82 4v4g:Ca (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    83 4v4g:D1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    84 4v4g:D2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    85 4v4g:D3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    86 4v4g:D4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    87 4v4g:D5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    88 4v4g:D6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    89 4v4g:D7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    90 4v4g:DD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    91 4v4g:DD (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    92 4v4g:DE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    93 4v4g:DF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    94 4v4g:DG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    95 4v4g:DG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    96 4v4g:DG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    97 4v4g:DH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    98 4v4g:DI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    99 4v4g:DJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    100 4v4g:DK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    101 4v4g:DL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    102 4v4g:DM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    103 4v4g:DN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    104 4v4g:DN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    105 4v4g:DO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    106 4v4g:DP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    107 4v4g:DP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    108 4v4g:DQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    109 4v4g:DQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    110 4v4g:DR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    111 4v4g:DS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    112 4v4g:DT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    113 4v4g:DU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    114 4v4g:DV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    115 4v4g:DW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    116 4v4g:DW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    117 4v4g:DX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    118 4v4g:DY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    119 4v4g:DZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    120 4v4g:DZ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    121 4v4g:EB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    122 4v4g:EC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    123 4v4g:ED (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    124 4v4g:EE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    125 4v4g:EF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    126 4v4g:EG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    127 4v4g:EH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    128 4v4g:EI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    129 4v4g:EJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    130 4v4g:EK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    131 4v4g:EL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    132 4v4g:EM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    133 4v4g:EM (11.5) BS02 rna N/A GO:0003676 ... N/A 15502846
    134 4v4g:EN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    135 4v4g:EO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    136 4v4g:EP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    137 4v4g:EQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    138 4v4g:ER (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    139 4v4g:ES (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    140 4v4g:ET (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    141 4v4g:Ea (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    142 4v4g:F1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    143 4v4g:F2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    144 4v4g:F3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    145 4v4g:F4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    146 4v4g:F5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    147 4v4g:F6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    148 4v4g:F7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    149 4v4g:FD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    150 4v4g:FD (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    151 4v4g:FE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    152 4v4g:FF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    153 4v4g:FG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    154 4v4g:FG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    155 4v4g:FG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    156 4v4g:FH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    157 4v4g:FI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    158 4v4g:FJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    159 4v4g:FK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    160 4v4g:FL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    161 4v4g:FM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    162 4v4g:FN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    163 4v4g:FN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    164 4v4g:FO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    165 4v4g:FP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    166 4v4g:FP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    167 4v4g:FQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    168 4v4g:FQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    169 4v4g:FR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    170 4v4g:FS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    171 4v4g:FT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    172 4v4g:FU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    173 4v4g:FV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    174 4v4g:FW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    175 4v4g:FW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    176 4v4g:FX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    177 4v4g:FX (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    178 4v4g:FY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    179 4v4g:FZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    180 4v4g:FZ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    181 4v4g:GB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    182 4v4g:GC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    183 4v4g:GD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    184 4v4g:GE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    185 4v4g:GF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    186 4v4g:GG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    187 4v4g:GH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    188 4v4g:GI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    189 4v4g:GJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    190 4v4g:GK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    191 4v4g:GL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    192 4v4g:GM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    193 4v4g:GN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    194 4v4g:GO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    195 4v4g:GO (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    196 4v4g:GP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    197 4v4g:GQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    198 4v4g:GR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    199 4v4g:GS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    200 4v4g:GT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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