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BioLiP
Download all results in tab-seperated text for 136 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4tub:QB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    2 4tub:QC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    3 4tub:QD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    4 4tub:QD (3.6) BS02 ZN ? GO:0003723 ... P80373 25352689
    5 4tub:QE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    6 4tub:QF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    7 4tub:QF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    8 4tub:QG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    9 4tub:QH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    10 4tub:QI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    11 4tub:QI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    12 4tub:QJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    13 4tub:QJ (3.6) BS02 rna ? GO:0000049 ... Q5SHN7 25352689
    14 4tub:QK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    15 4tub:QL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    16 4tub:QM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    17 4tub:QM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    18 4tub:QM (3.6) BS03 MG ? GO:0000049 ... P80377 25352689
    19 4tub:QN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    20 4tub:QN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    21 4tub:QO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    22 4tub:QO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    23 4tub:QP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    24 4tub:QQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    25 4tub:QR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    26 4tub:QS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    27 4tub:QT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    28 4tub:R0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    29 4tub:R0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    30 4tub:R0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    31 4tub:R1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    32 4tub:R2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    33 4tub:R3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    34 4tub:R3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    35 4tub:R4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    36 4tub:R4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    37 4tub:R5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    38 4tub:R6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    39 4tub:R7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    40 4tub:R8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    41 4tub:R9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    42 4tub:RD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    43 4tub:RD (3.6) BS02 rna ? GO:0002181 ... P60405 25352689
    44 4tub:RD (3.6) BS03 MG ? GO:0002181 ... P60405 25352689
    45 4tub:RE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    46 4tub:RF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    47 4tub:RF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 25352689
    48 4tub:RG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    49 4tub:RG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    50 4tub:RG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25352689
    51 4tub:RH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    52 4tub:RI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    53 4tub:RN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    54 4tub:RO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    55 4tub:RO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    56 4tub:RP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    57 4tub:RQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    58 4tub:RQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    59 4tub:RR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    60 4tub:RS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    61 4tub:RS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    62 4tub:RT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    63 4tub:RT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    64 4tub:RU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    65 4tub:RV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    66 4tub:RW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    67 4tub:RX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    68 4tub:RY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    69 4tub:RZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    70 4tub:RZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    71 4tub:XB (3.6) BS01 rna ? GO:0003735 ... P80371 25352689
    72 4tub:XC (3.6) BS01 rna ? GO:0003676 ... P80372 25352689
    73 4tub:XD (3.6) BS01 rna ? GO:0003723 ... P80373 25352689
    74 4tub:XE (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25352689
    75 4tub:XF (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 25352689
    76 4tub:XF (3.6) BS02 MG ? GO:0003735 ... Q5SLP8 25352689
    77 4tub:XG (3.6) BS01 rna ? GO:0000028 ... P17291 25352689
    78 4tub:XH (3.6) BS01 rna ? GO:0003735 ... P0DOY9 25352689
    79 4tub:XI (3.6) BS01 rna ? GO:0000049 ... P80374 25352689
    80 4tub:XI (3.6) BS02 rna ? GO:0000049 ... P80374 25352689
    81 4tub:XJ (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 25352689
    82 4tub:XK (3.6) BS01 rna ? GO:0003735 ... P80376 25352689
    83 4tub:XL (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 25352689
    84 4tub:XL (3.6) BS02 rna ? GO:0000049 ... Q5SHN3 25352689
    85 4tub:XM (3.6) BS01 rna ? GO:0000049 ... P80377 25352689
    86 4tub:XM (3.6) BS02 rna ? GO:0000049 ... P80377 25352689
    87 4tub:XM (3.6) BS03 rna ? GO:0000049 ... P80377 25352689
    88 4tub:XN (3.6) BS01 rna ? GO:0003735 ... P0DOY6 25352689
    89 4tub:XN (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 25352689
    90 4tub:XO (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 25352689
    91 4tub:XO (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 25352689
    92 4tub:XP (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 25352689
    93 4tub:XQ (3.6) BS01 rna ? GO:0003735 ... P0DOY7 25352689
    94 4tub:XR (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25352689
    95 4tub:XS (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 25352689
    96 4tub:XT (3.6) BS01 rna ? GO:0003723 ... P80380 25352689
    97 4tub:Y0 (3.6) BS01 rna ? GO:0003735 ... P60493 25352689
    98 4tub:Y0 (3.6) BS02 rna ? GO:0003735 ... P60493 25352689
    99 4tub:Y0 (3.6) BS03 rna ? GO:0003735 ... P60493 25352689
    100 4tub:Y1 (3.6) BS01 rna ? GO:0003735 ... P60494 25352689
    101 4tub:Y2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 25352689
    102 4tub:Y3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25352689
    103 4tub:Y3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25352689
    104 4tub:Y4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 25352689
    105 4tub:Y4 (3.6) BS02 rna ? GO:0003735 ... Q5SJE1 25352689
    106 4tub:Y5 (3.6) BS01 rna ? GO:0003735 ... P80339 25352689
    107 4tub:Y6 (3.6) BS01 rna ? GO:0000049 ... P35871 25352689
    108 4tub:Y7 (3.6) BS01 rna ? GO:0003735 ... P80340 25352689
    109 4tub:Y8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 25352689
    110 4tub:Y9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 25352689
    111 4tub:YD (3.6) BS01 rna ? GO:0002181 ... P60405 25352689
    112 4tub:YE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 25352689
    113 4tub:YF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 25352689
    114 4tub:YG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25352689
    115 4tub:YG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25352689
    116 4tub:YH (3.6) BS01 rna ? GO:0002181 ... P0DOY8 25352689
    117 4tub:YI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25352689
    118 4tub:YI (3.6) BS02 rna ? GO:0003735 ... Q5SLQ1 25352689
    119 4tub:YN (3.6) BS01 rna ? GO:0003729 ... P60488 25352689
    120 4tub:YO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 25352689
    121 4tub:YO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 25352689
    122 4tub:YP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25352689
    123 4tub:YQ (3.6) BS01 rna ? GO:0000049 ... P60489 25352689
    124 4tub:YQ (3.6) BS02 rna ? GO:0000049 ... P60489 25352689
    125 4tub:YR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25352689
    126 4tub:YS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25352689
    127 4tub:YS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25352689
    128 4tub:YT (3.6) BS01 rna ? GO:0003735 ... P60490 25352689
    129 4tub:YT (3.6) BS02 rna ? GO:0003735 ... P60490 25352689
    130 4tub:YU (3.6) BS01 rna ? GO:0000027 ... P60491 25352689
    131 4tub:YV (3.6) BS01 rna ? GO:0003723 ... P60492 25352689
    132 4tub:YW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 25352689
    133 4tub:YX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 25352689
    134 4tub:YY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 25352689
    135 4tub:YZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25352689
    136 4tub:YZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25352689
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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