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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ji8:B (3.742) BS01 rna ? GO:0003735 ... P80371 24152548
    2 4ji8:B (3.742) BS02 MG ? GO:0003735 ... P80371 24152548
    3 4ji8:C (3.742) BS01 rna ? GO:0003676 ... P80372 24152548
    4 4ji8:D (3.742) BS01 rna ? GO:0003723 ... P80373 24152548
    5 4ji8:D (3.742) BS02 ZN ? GO:0003723 ... P80373 24152548
    6 4ji8:E (3.742) BS01 rna ? GO:0003723 ... Q5SHQ5 24152548
    7 4ji8:F (3.742) BS01 rna ? GO:0003735 ... Q5SLP8 24152548
    8 4ji8:G (3.742) BS01 rna ? GO:0000028 ... P17291 24152548
    9 4ji8:H (3.742) BS01 rna ? GO:0003735 ... P0DOY9 24152548
    10 4ji8:I (3.742) BS01 rna ? GO:0000049 ... P80374 24152548
    11 4ji8:J (3.742) BS01 rna ? GO:0000049 ... Q5SHN7 24152548
    12 4ji8:K (3.742) BS01 rna ? GO:0003735 ... P80376 24152548
    13 4ji8:K (3.742) BS02 MG ? GO:0003735 ... P80376 24152548
    14 4ji8:L (3.742) BS01 rna ? GO:0000049 ... Q5SHN3 24152548
    15 4ji8:L (3.742) BS02 SRY ? GO:0000049 ... Q5SHN3 24152548
    16 4ji8:M (3.742) BS01 rna ? GO:0000049 ... P80377 24152548
    17 4ji8:N (3.742) BS01 rna ? GO:0003735 ... P0DOY6 24152548
    18 4ji8:N (3.742) BS02 ZN ? GO:0003735 ... P0DOY6 24152548
    19 4ji8:O (3.742) BS01 rna ? GO:0003735 ... Q5SJ76 24152548
    20 4ji8:P (3.742) BS01 rna ? GO:0003735 ... Q5SJH3 24152548
    21 4ji8:Q (3.742) BS01 rna ? GO:0003735 ... P0DOY7 24152548
    22 4ji8:R (3.742) BS01 rna ? GO:0003735 ... Q5SLQ0 24152548
    23 4ji8:S (3.742) BS01 rna ? GO:0000028 ... Q5SHP2 24152548
    24 4ji8:T (3.742) BS01 rna ? GO:0003723 ... P80380 24152548
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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