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BioLiP Library
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4dl1:A (2.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    2 4dl1:B (2.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    3 4dl1:C (2.0) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 22352991
    4 4dl1:C (2.0) BS02 0KY 1.11.2.2 GO:0004601 ... P05164 22352991
    5 4dl1:C (2.0) BS03 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    6 4dl1:C (2.0) BS04 CA 1.11.2.2 GO:0004601 ... P05164 22352991
    7 4dl1:D (2.0) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 22352991
    8 4dl1:D (2.0) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    9 4dl1:D (2.0) BS03 0KY 1.11.2.2 GO:0004601 ... P05164 22352991
    10 4dl1:D (2.0) BS04 CA 1.11.2.2 GO:0004601 ... P05164 22352991
    11 4dl1:E (2.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    12 4dl1:F (2.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    13 4dl1:G (2.0) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 22352991
    14 4dl1:G (2.0) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    15 4dl1:G (2.0) BS03 CA 1.11.2.2 GO:0004601 ... P05164 22352991
    16 4dl1:G (2.0) BS04 0KY 1.11.2.2 GO:0004601 ... P05164 22352991
    17 4dl1:H (2.0) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 22352991
    18 4dl1:H (2.0) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    19 4dl1:H (2.0) BS03 CA 1.11.2.2 GO:0004601 ... P05164 22352991
    20 4dl1:H (2.0) BS04 0KY 1.11.2.2 GO:0004601 ... P05164 22352991
    21 4dl1:I (2.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    22 4dl1:J (2.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    23 4dl1:K (2.0) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 22352991
    24 4dl1:K (2.0) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 22352991
    25 4dl1:K (2.0) BS03 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    26 4dl1:K (2.0) BS04 0KY 1.11.2.2 GO:0004601 ... P05164 22352991
    27 4dl1:K (2.0) BS05 CA 1.11.2.2 GO:0004601 ... P05164 22352991
    28 4dl1:L (2.0) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 22352991
    29 4dl1:L (2.0) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    30 4dl1:L (2.0) BS03 CA 1.11.2.2 GO:0004601 ... P05164 22352991
    31 4dl1:M (2.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    32 4dl1:N (2.0) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    33 4dl1:O (2.0) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 22352991
    34 4dl1:O (2.0) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    35 4dl1:O (2.0) BS03 CA 1.11.2.2 GO:0004601 ... P05164 22352991
    36 4dl1:O (2.0) BS04 0KY 1.11.2.2 GO:0004601 ... P05164 22352991
    37 4dl1:P (2.0) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 22352991
    38 4dl1:P (2.0) BS02 HEM 1.11.2.2 GO:0004601 ... P05164 22352991
    39 4dl1:P (2.0) BS03 CA 1.11.2.2 GO:0004601 ... P05164 22352991
    40 4dl1:P (2.0) BS04 0KY 1.11.2.2 GO:0004601 ... P05164 22352991
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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