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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3mvd:A (2.9) BS01 dna ? GO:0000786 ... P84233 20739938
    2 3mvd:A (2.9) BS02 dna ? GO:0000786 ... P84233 20739938
    3 3mvd:B (2.9) BS01 dna ? GO:0000786 ... P62799 20739938
    4 3mvd:B (2.9) BS02 dna ? GO:0000786 ... P62799 20739938
    5 3mvd:C (2.9) BS01 dna ? GO:0000786 ... Q6AZJ8 20739938
    6 3mvd:C (2.9) BS02 dna ? GO:0000786 ... Q6AZJ8 20739938
    7 3mvd:D (2.9) BS01 dna ? GO:0000786 ... P02281 20739938
    8 3mvd:D (2.9) BS02 dna ? GO:0000786 ... P02281 20739938
    9 3mvd:E (2.9) BS01 dna ? GO:0000786 ... P84233 20739938
    10 3mvd:E (2.9) BS02 dna ? GO:0000786 ... P84233 20739938
    11 3mvd:F (2.9) BS01 dna ? GO:0000786 ... P62799 20739938
    12 3mvd:F (2.9) BS02 dna ? GO:0000786 ... P62799 20739938
    13 3mvd:G (2.9) BS01 dna ? GO:0000786 ... Q6AZJ8 20739938
    14 3mvd:G (2.9) BS02 dna ? GO:0000786 ... Q6AZJ8 20739938
    15 3mvd:H (2.9) BS01 dna ? GO:0000786 ... P02281 20739938
    16 3mvd:H (2.9) BS02 dna ? GO:0000786 ... P02281 20739938
    17 3mvd:K (2.9) BS01 dna ? N/A P25171 20739938
    18 3mvd:L (2.9) BS01 dna ? N/A P25171 20739938
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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