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BioLiP
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3k9x:A (1.9) BS01 MBM 3.4.21.6 GO:0005509 ... P00742 19896847 BindingDB: IC50=4nM
    2 3k9x:B (1.9) BS01 MBM 3.4.21.6 GO:0004252 ... P00742 19896847 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4nM
    3 3k9x:B (1.9) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19896847
    4 3k9x:D (1.9) BS01 MBM 3.4.21.6 GO:0004252 ... P00742 19896847 MOAD: ic50=4nM
    BindingDB: IC50=4nM
    5 3k9x:D (1.9) BS02 CA 3.4.21.6 GO:0004252 ... P00742 19896847
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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