Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jd5:B (7.0) BS01 rna ? GO:0003735 ... P82923 24799711
    2 3jd5:C (7.0) BS01 rna ? GO:0003735 ... Q2M2T7 24799711
    3 3jd5:E (7.0) BS01 rna ? GO:0003723 ... Q2KID9 24799711
    4 3jd5:F (7.0) BS01 rna ? GO:0003735 ... P82931 24799711
    5 3jd5:G (7.0) BS01 rna ? GO:0000028 ... Q3T040 24799711
    6 3jd5:I (7.0) BS01 rna ? GO:0003723 ... Q58DQ5 24799711
    7 3jd5:J (7.0) BS01 rna ? GO:0005739 ... P82670 24799711
    8 3jd5:K (7.0) BS01 rna ? GO:0003735 ... P82911 24799711
    9 3jd5:L (7.0) BS01 rna ? GO:0003735 ... Q29RU1 24799711
    10 3jd5:N (7.0) BS01 rna ? GO:0003735 ... Q6B860 24799711
    11 3jd5:O (7.0) BS01 rna ? GO:0003735 ... P82913 24799711
    12 3jd5:P (7.0) BS01 rna ? GO:0003735 ... P82915 24799711
    13 3jd5:Q (7.0) BS01 rna ? GO:0003735 ... P82916 24799711
    14 3jd5:R (7.0) BS01 rna ? GO:0003735 ... P82917 24799711
    15 3jd5:U (7.0) BS01 rna ? GO:0003735 ... P82920 24799711
    16 3jd5:b (7.0) BS01 rna ? GO:0003735 ... Q2NL27 24799711
    17 3jd5:c (7.0) BS01 rna ? GO:0003735 ... P82669 24799711
    18 3jd5:d (7.0) BS01 rna ? GO:0003735 ... Q3SZ86 24799711
    19 3jd5:e (7.0) BS01 rna ? GO:0000049 ... Q32PI8 24799711
    20 3jd5:g (7.0) BS01 rna ? GO:0003735 ... P82922 24799711
    21 3jd5:h (7.0) BS01 peptide ? GO:0003735 ... P82925 24799711
    22 3jd5:i (7.0) BS01 rna ? GO:0005739 ... P82926 24799711
    23 3jd5:i (7.0) BS02 peptide ? GO:0005739 ... P82926 24799711
    24 3jd5:j (7.0) BS01 rna ? GO:0003735 ... P82929 24799711
    25 3jd5:k (7.0) BS01 rna ? GO:0003735 ... Q2YDF6 24799711
    26 3jd5:k (7.0) BS02 peptide ? GO:0003735 ... Q2YDF6 24799711
    27 3jd5:m (7.0) BS01 rna ? GO:0005654 ... Q2HJE8 24799711
    28 3jd5:n (7.0) BS01 rna ? GO:0005739 ... Q0VCJ1 24799711
    29 3jd5:o (7.0) BS01 peptide ? GO:0005739 ... Q2KI62 24799711
    30 3jd5:p (7.0) BS01 rna ? GO:0003735 ... P82918 24799711
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218