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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jap:A (4.9) BS01 rna ? GO:0000028 ... Q6CN12 26212456
    2 3jap:B (4.9) BS01 rna ? GO:0003735 ... Q6CWD0 26212456
    3 3jap:C (4.9) BS01 rna ? GO:0003723 ... Q6CKL3 26212456
    4 3jap:D (4.9) BS01 rna ? GO:0003723 ... Q6CRK7 26212456
    5 3jap:E (4.9) BS01 rna ? GO:0003723 ... Q6CWJ2 26212456
    6 3jap:F (4.9) BS01 rna ? GO:0000028 ... Q6CRA3 26212456
    7 3jap:F (4.9) BS02 rna ? GO:0000028 ... Q6CRA3 26212456
    8 3jap:G (4.9) BS01 rna ? GO:0003735 ... Q6CM04 26212456
    9 3jap:H (4.9) BS01 rna ? GO:0003735 ... Q6CTD6 26212456
    10 3jap:I (4.9) BS01 rna ? GO:0000462 ... Q6CMG3 26212456
    11 3jap:J (4.9) BS01 rna ? GO:0003723 ... Q6CM18 26212456
    12 3jap:K (4.9) BS01 rna ? GO:0003723 ... Q6CVZ5 26212456
    13 3jap:L (4.9) BS01 rna ? GO:0003735 ... Q6CX80 26212456
    14 3jap:M (4.9) BS01 rna ? GO:0003735 ... Q6CLU4 26212456
    15 3jap:N (4.9) BS01 rna ? GO:0003735 ... Q6CJK0 26212456
    16 3jap:O (4.9) BS01 rna ? GO:0000028 ... P27069 26212456
    17 3jap:P (4.9) BS01 rna ? GO:0000028 ... Q6CKV4 26212456
    18 3jap:Q (4.9) BS01 rna ? GO:0000462 ... Q875N2 26212456
    19 3jap:R (4.9) BS01 rna ? GO:0003735 ... Q6CWU3 26212456
    20 3jap:S (4.9) BS01 rna ? GO:0003676 ... Q6CWT9 26212456
    21 3jap:T (4.9) BS01 rna ? GO:0000028 ... Q6CXM0 26212456
    22 3jap:U (4.9) BS01 rna ? GO:0003735 ... Q6CIM1 26212456
    23 3jap:W (4.9) BS01 rna ? GO:0003735 ... Q6CW21 26212456
    24 3jap:X (4.9) BS01 rna ? GO:0003735 ... F2Z602 26212456
    25 3jap:Y (4.9) BS01 rna ? GO:0003735 ... Q6CU44 26212456
    26 3jap:Z (4.9) BS01 rna ? GO:0003735 ... Q6CW78 26212456
    27 3jap:a (4.9) BS01 rna ? GO:0003729 ... Q6CS01 26212456
    28 3jap:a (4.9) BS02 ZN ? GO:0003729 ... Q6CS01 26212456
    29 3jap:b (4.9) BS01 rna ? GO:0000028 ... Q6CNL2 26212456
    30 3jap:b (4.9) BS02 ZN ? GO:0000028 ... Q6CNL2 26212456
    31 3jap:c (4.9) BS01 rna ? GO:0000028 ... P33285 26212456
    32 3jap:c (4.9) BS02 rna ? GO:0000028 ... P33285 26212456
    33 3jap:d (4.9) BS01 rna ? GO:0003735 ... Q6CPG3 26212456
    34 3jap:e (4.9) BS01 rna ? GO:0003735 ... Q6CUH5 26212456
    35 3jap:f (4.9) BS01 rna ? GO:0003735 ... P69061 26212456
    36 3jap:f (4.9) BS02 ZN ? GO:0003735 ... P69061 26212456
    37 3jap:g (4.9) BS01 rna ? GO:0001934 ... Q6CNI7 26212456
    38 3jap:i (4.9) BS01 rna ? GO:0001677 ... P38912 26212456
    39 3jap:i (4.9) BS02 rna ? GO:0001677 ... P38912 26212456
    40 3jap:j (4.9) BS01 rna ? GO:0001731 ... P20459 26212456
    41 3jap:j (4.9) BS02 rna ? GO:0001731 ... P20459 26212456
    42 3jap:k (4.9) BS01 rna 3.6.5.3 GO:0000049 ... P32481 26212456
    43 3jap:k (4.9) BS02 MET 3.6.5.3 GO:0000049 ... P32481 26212456
    44 3jap:l (4.9) BS01 rna ? GO:0001731 ... P09064 26212456
    45 3jap:l (4.9) BS02 rna ? GO:0001731 ... P09064 26212456
    46 3jap:l (4.9) BS03 ZN ? GO:0001731 ... P09064 26212456
    47 3jap:m (4.9) BS01 rna ? GO:0001731 ... P32911 26212456
    48 3jap:m (4.9) BS02 rna ? GO:0001731 ... P32911 26212456
    49 3jap:p (4.9) BS01 rna ? GO:0003723 ... P32497 26212456
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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