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BioLiP
Download all results in tab-seperated text for 98 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3j77:10 (6.2) BS01 rna ? GO:0000054 ... Q08745 25043550
    2 3j77:11 (6.2) BS01 rna ? GO:0000028 ... P0CX47 25043550
    3 3j77:12 (6.2) BS01 rna ? GO:0000028 ... P48589 25043550
    4 3j77:13 (6.2) BS01 rna ? GO:0000462 ... P05756 25043550
    5 3j77:14 (6.2) BS01 rna ? GO:0000028 ... P06367 25043550
    6 3j77:15 (6.2) BS01 rna ? GO:0000028 ... Q01855 25043550
    7 3j77:16 (6.2) BS01 rna ? GO:0000462 ... P0CX51 25043550
    8 3j77:17 (6.2) BS01 rna ? GO:0000028 ... P02407 25043550
    9 3j77:18 (6.2) BS01 rna ? GO:0000054 ... P0CX55 25043550
    10 3j77:19 (6.2) BS01 rna ? GO:0000028 ... P07280 25043550
    11 3j77:20 (6.2) BS01 rna ? GO:0000462 ... P38701 25043550
    12 3j77:21 (6.2) BS01 rna ? GO:0000447 ... P0C0V8 25043550
    13 3j77:22 (6.2) BS01 rna ? GO:0002181 ... P0C0W1 25043550
    14 3j77:23 (6.2) BS01 rna ? GO:0000462 ... P0CX29 25043550
    15 3j77:24 (6.2) BS01 rna ? GO:0000462 ... P0CX31 25043550
    16 3j77:25 (6.2) BS01 rna ? GO:0002181 ... Q3E792 25043550
    17 3j77:26 (6.2) BS01 rna ? GO:0000054 ... P39938 25043550
    18 3j77:27 (6.2) BS01 rna ? GO:0000028 ... P35997 25043550
    19 3j77:28 (6.2) BS01 rna ? GO:0000028 ... Q3E7X9 25043550
    20 3j77:29 (6.2) BS01 rna ? GO:0002181 ... P41057 25043550
    21 3j77:30 (6.2) BS01 rna ? GO:0002181 ... P0CX33 25043550
    22 3j77:31 (6.2) BS01 rna ? GO:0000028 ... P05759 25043550
    23 3j77:60 (6.2) BS01 rna ? GO:0000027 ... P41805 25043550
    24 3j77:60 (6.2) BS02 rna ? GO:0000027 ... P41805 25043550
    25 3j77:61 (6.2) BS01 rna ? GO:0000027 ... P0C0W9 25043550
    26 3j77:61 (6.2) BS02 rna ? GO:0000027 ... P0C0W9 25043550
    27 3j77:62 (6.2) BS01 rna ? GO:0000027 ... P0CX53 25043550
    28 3j77:63 (6.2) BS01 rna ? GO:0002181 ... Q12690 25043550
    29 3j77:63 (6.2) BS02 rna ? GO:0002181 ... Q12690 25043550
    30 3j77:64 (6.2) BS01 rna ? GO:0000027 ... P36105 25043550
    31 3j77:65 (6.2) BS01 rna ? GO:0002181 ... P05748 25043550
    32 3j77:65 (6.2) BS02 rna ? GO:0002181 ... P05748 25043550
    33 3j77:66 (6.2) BS01 rna ? GO:0000470 ... P26784 25043550
    34 3j77:67 (6.2) BS01 rna ? GO:0000448 ... P05740 25043550
    35 3j77:67 (6.2) BS02 rna ? GO:0000448 ... P05740 25043550
    36 3j77:68 (6.2) BS01 rna ? GO:0002181 ... P0CX49 25043550
    37 3j77:69 (6.2) BS01 rna ? GO:0002181 ... P0CX82 25043550
    38 3j77:69 (6.2) BS02 rna ? GO:0002181 ... P0CX82 25043550
    39 3j77:70 (6.2) BS01 rna ? GO:0002181 ... P0CX23 25043550
    40 3j77:70 (6.2) BS02 rna ? GO:0002181 ... P0CX23 25043550
    41 3j77:71 (6.2) BS01 rna ? GO:0002181 ... Q02753 25043550
    42 3j77:71 (6.2) BS02 rna ? GO:0002181 ... Q02753 25043550
    43 3j77:72 (6.2) BS01 rna ? GO:0002181 ... P05749 25043550
    44 3j77:73 (6.2) BS01 rna ? GO:0002181 ... P0CX41 25043550
    45 3j77:73 (6.2) BS02 rna ? GO:0002181 ... P0CX41 25043550
    46 3j77:74 (6.2) BS01 rna ? GO:0002181 ... P04449 25043550
    47 3j77:74 (6.2) BS02 rna ? GO:0002181 ... P04449 25043550
    48 3j77:75 (6.2) BS01 rna ? GO:0000027 ... P04456 25043550
    49 3j77:75 (6.2) BS02 rna ? GO:0000027 ... P04456 25043550
    50 3j77:76 (6.2) BS01 rna ? GO:0002181 ... P05743 25043550
    51 3j77:76 (6.2) BS02 rna ? GO:0002181 ... P05743 25043550
    52 3j77:77 (6.2) BS01 rna ? GO:0002181 ... P0C2H6 25043550
    53 3j77:78 (6.2) BS01 rna ? GO:0002181 ... P02406 25043550
    54 3j77:79 (6.2) BS01 rna ? GO:0002181 ... P05747 25043550
    55 3j77:80 (6.2) BS01 rna ? GO:0002181 ... P14120 25043550
    56 3j77:81 (6.2) BS01 rna ? GO:0002181 ... P0C2H8 25043550
    57 3j77:82 (6.2) BS01 rna ? GO:0002181 ... P38061 25043550
    58 3j77:83 (6.2) BS01 rna ? GO:0000027 ... P05744 25043550
    59 3j77:84 (6.2) BS01 rna ? GO:0002181 ... P87262 25043550
    60 3j77:85 (6.2) BS01 rna ? GO:0000463 ... P0CX84 25043550
    61 3j77:85 (6.2) BS02 rna ? GO:0000463 ... P0CX84 25043550
    62 3j77:86 (6.2) BS01 rna ? GO:0002181 ... P05745 25043550
    63 3j77:87 (6.2) BS01 rna ? GO:0000448 ... P49166 25043550
    64 3j77:87 (6.2) BS02 rna ? GO:0000448 ... P49166 25043550
    65 3j77:88 (6.2) BS01 rna ? GO:0002181 ... P49167 25043550
    66 3j77:89 (6.2) BS01 rna ? GO:0002181 ... P04650 25043550
    67 3j77:89 (6.2) BS02 rna ? GO:0002181 ... P04650 25043550
    68 3j77:90 (6.2) BS01 rna ? GO:0000027 ... P0CH08 25043550
    69 3j77:92 (6.2) BS01 rna ? GO:0002181 ... P0CX27 25043550
    70 3j77:92 (6.2) BS02 rna ? GO:0002181 ... P0CX27 25043550
    71 3j77:93 (6.2) BS01 rna ? GO:0002181 ... P0CX25 25043550
    72 3j77:93 (6.2) BS02 rna ? GO:0002181 ... P0CX25 25043550
    73 3j77:L1 (6.2) BS01 rna ? GO:0000055 ... P0CX43 25043550
    74 3j77:L2 (6.2) BS01 rna ? GO:0002181 ... P0CX45 25043550
    75 3j77:L3 (6.2) BS01 rna ? GO:0000027 ... P14126 25043550
    76 3j77:L4 (6.2) BS01 rna ? GO:0002181 ... P10664 25043550
    77 3j77:L4 (6.2) BS02 rna ? GO:0002181 ... P10664 25043550
    78 3j77:L5 (6.2) BS01 rna ? GO:0000027 ... P26321 25043550
    79 3j77:L5 (6.2) BS02 rna ? GO:0000027 ... P26321 25043550
    80 3j77:L6 (6.2) BS01 rna ? GO:0000027 ... Q02326 25043550
    81 3j77:L7 (6.2) BS01 rna ? GO:0000463 ... P05737 25043550
    82 3j77:L7 (6.2) BS02 rna ? GO:0000463 ... P05737 25043550
    83 3j77:L8 (6.2) BS01 rna ? GO:0000470 ... P17076 25043550
    84 3j77:L8 (6.2) BS02 rna ? GO:0000470 ... P17076 25043550
    85 3j77:L9 (6.2) BS01 rna ? GO:0002181 ... P05738 25043550
    86 3j77:P0 (6.2) BS01 rna ? GO:0000027 ... P05317 25043550
    87 3j77:RC (6.2) BS01 rna ? GO:0001965 ... P38011 25043550
    88 3j77:S0 (6.2) BS01 rna ? GO:0000028 ... P32905 25043550
    89 3j77:S1 (6.2) BS01 rna ? GO:0000462 ... P33442 25043550
    90 3j77:S1 (6.2) BS02 rna ? GO:0000462 ... P33442 25043550
    91 3j77:S2 (6.2) BS01 rna ? GO:0000054 ... P25443 25043550
    92 3j77:S3 (6.2) BS01 rna ? GO:0000054 ... P05750 25043550
    93 3j77:S4 (6.2) BS01 rna ? GO:0002181 ... P0CX35 25043550
    94 3j77:S5 (6.2) BS01 rna ? GO:0000028 ... P26783 25043550
    95 3j77:S6 (6.2) BS01 rna ? GO:0000462 ... P0CX37 25043550
    96 3j77:S7 (6.2) BS01 rna ? GO:0002181 ... P26786 25043550
    97 3j77:S8 (6.2) BS01 rna ? GO:0000462 ... P0CX39 25043550
    98 3j77:S9 (6.2) BS01 rna ? GO:0000462 ... O13516 25043550
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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