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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3f07:A (3.3) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 19053282
    2 3f07:A (3.3) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 19053282
    3 3f07:A (3.3) BS03 AGE 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 19053282 PDBbind: -logKd/Ki=5.54, IC50=2.9uM
    4 3f07:B (3.3) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 19053282
    5 3f07:B (3.3) BS02 AGE 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 19053282
    6 3f07:C (3.3) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 19053282
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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