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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3dby:A (2.1) BS01 FE N/A N/A N/A N/A
    2 3dby:A (2.1) BS02 FE N/A N/A N/A N/A
    3 3dby:B (2.1) BS01 FE N/A N/A N/A N/A
    4 3dby:B (2.1) BS02 FE N/A N/A N/A N/A
    5 3dby:C (2.1) BS01 FE N/A N/A N/A N/A
    6 3dby:C (2.1) BS02 FE N/A N/A N/A N/A
    7 3dby:D (2.1) BS01 FE N/A N/A N/A N/A
    8 3dby:D (2.1) BS02 FE N/A N/A N/A N/A
    9 3dby:E (2.1) BS01 FE N/A N/A N/A N/A
    10 3dby:E (2.1) BS02 FE N/A N/A N/A N/A
    11 3dby:F (2.1) BS01 FE N/A N/A N/A N/A
    12 3dby:F (2.1) BS02 FE N/A N/A N/A N/A
    13 3dby:G (2.1) BS01 FE N/A N/A N/A N/A
    14 3dby:G (2.1) BS02 FE N/A N/A N/A N/A
    15 3dby:H (2.1) BS01 FE N/A N/A N/A N/A
    16 3dby:H (2.1) BS02 FE N/A N/A N/A N/A
    17 3dby:I (2.1) BS01 FE N/A N/A N/A N/A
    18 3dby:I (2.1) BS02 FE N/A N/A N/A N/A
    19 3dby:J (2.1) BS01 FE N/A N/A N/A N/A
    20 3dby:J (2.1) BS02 FE N/A N/A N/A N/A
    21 3dby:K (2.1) BS01 FE N/A N/A N/A N/A
    22 3dby:K (2.1) BS02 FE N/A N/A N/A N/A
    23 3dby:L (2.1) BS01 FE N/A N/A N/A N/A
    24 3dby:L (2.1) BS02 FE N/A N/A N/A N/A
    25 3dby:M (2.1) BS01 FE N/A N/A N/A N/A
    26 3dby:M (2.1) BS02 FE N/A N/A N/A N/A
    27 3dby:N (2.1) BS01 FE N/A N/A N/A N/A
    28 3dby:N (2.1) BS02 FE N/A N/A N/A N/A
    29 3dby:O (2.1) BS01 FE N/A N/A N/A N/A
    30 3dby:O (2.1) BS02 FE N/A N/A N/A N/A
    31 3dby:P (2.1) BS01 FE N/A N/A N/A N/A
    32 3dby:P (2.1) BS02 FE N/A N/A N/A N/A
    33 3dby:Q (2.1) BS01 FE N/A N/A N/A N/A
    34 3dby:Q (2.1) BS02 FE N/A N/A N/A N/A
    35 3dby:R (2.1) BS01 FE N/A N/A N/A N/A
    36 3dby:R (2.1) BS02 FE N/A N/A N/A N/A
    37 3dby:S (2.1) BS01 FE N/A N/A N/A N/A
    38 3dby:S (2.1) BS02 FE N/A N/A N/A N/A
    39 3dby:T (2.1) BS01 FE N/A N/A N/A N/A
    40 3dby:T (2.1) BS02 FE N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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