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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ybb:1 (19.0) BS01 SF4 7.1.1.- GO:0005886 ... Q56222 21909073
    2 2ybb:1 (19.0) BS02 FMN 7.1.1.- GO:0005886 ... Q56222 21909073
    3 2ybb:1 (19.0) BS03 NAI 7.1.1.- GO:0005886 ... Q56222 21909073
    4 2ybb:2 (19.0) BS01 FES 7.1.1.- GO:0003954 ... Q56221 21909073
    5 2ybb:3 (19.0) BS01 SF4 7.1.1.- GO:0003954 ... Q56223 21909073
    6 2ybb:3 (19.0) BS02 SF4 7.1.1.- GO:0003954 ... Q56223 21909073
    7 2ybb:3 (19.0) BS03 SF4 7.1.1.- GO:0003954 ... Q56223 21909073
    8 2ybb:3 (19.0) BS04 FES 7.1.1.- GO:0003954 ... Q56223 21909073
    9 2ybb:3 (19.0) BS05 MG 7.1.1.- GO:0003954 ... Q56223 21909073
    10 2ybb:4 (19.0) BS01 SF4 7.1.1.- GO:0005886 ... Q56220 21909073
    11 2ybb:6 (19.0) BS01 SF4 7.1.1.- GO:0005506 ... Q56218 21909073
    12 2ybb:7 (19.0) BS01 CA 7.1.1.- GO:0005886 ... Q5SKZ7 21909073
    13 2ybb:8 (19.0) BS01 SF4 7.1.1.- GO:0003954 ... Q56224 21909073
    14 2ybb:8 (19.0) BS02 SF4 7.1.1.- GO:0003954 ... Q56224 21909073
    15 2ybb:A (19.0) BS01 peptide 1.10.2.2 GO:0005739 ... P31800 21909073
    16 2ybb:C (19.0) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 21909073
    17 2ybb:C (19.0) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 21909073
    18 2ybb:C (19.0) BS03 SMA 1.10.2.2 GO:0005739 ... P00157 21909073
    19 2ybb:C (19.0) BS04 UQ1 1.10.2.2 GO:0005739 ... P00157 21909073
    20 2ybb:D (19.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 21909073
    21 2ybb:E (19.0) BS01 FES 7.1.1.8 GO:0008121 ... P13272 21909073
    22 2ybb:E (19.0) BS02 SMA 7.1.1.8 GO:0008121 ... P13272 21909073
    23 2ybb:J (19.0) BS01 peptide 1.10.2.2 GO:0005739 ... P00130 21909073
    24 2ybb:L (19.0) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 21909073
    25 2ybb:L (19.0) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 21909073
    26 2ybb:L (19.0) BS03 CU 7.1.1.9 GO:0004129 ... P00396 21909073
    27 2ybb:L (19.0) BS04 MG 7.1.1.9 GO:0004129 ... P00396 21909073
    28 2ybb:M (19.0) BS01 CU 7.1.1.9 GO:0004129 ... P68530 21909073
    29 2ybb:M (19.0) BS02 CU 7.1.1.9 GO:0004129 ... P68530 21909073
    30 2ybb:Q (19.0) BS01 ZN 1.9.3.1 GO:0005740 ... P00428 21909073
    31 2ybb:Y (19.0) BS01 HEM ? GO:0005739 ... P62894 21909073
    32 2ybb:a (19.0) BS01 peptide 1.10.2.2 GO:0005739 ... P31800 21909073
    33 2ybb:c (19.0) BS01 HEM 1.10.2.2 GO:0005739 ... P00157 21909073
    34 2ybb:c (19.0) BS02 HEM 1.10.2.2 GO:0005739 ... P00157 21909073
    35 2ybb:c (19.0) BS03 SMA 1.10.2.2 GO:0005739 ... P00157 21909073
    36 2ybb:c (19.0) BS04 UQ1 1.10.2.2 GO:0005739 ... P00157 21909073
    37 2ybb:d (19.0) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 21909073
    38 2ybb:e (19.0) BS01 SMA 7.1.1.8 GO:0008121 ... P13272 21909073
    39 2ybb:e (19.0) BS02 FES 7.1.1.8 GO:0008121 ... P13272 21909073
    40 2ybb:j (19.0) BS01 peptide 1.10.2.2 GO:0005739 ... P00130 21909073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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