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BioLiP Library
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1yi2:1 (2.65) BS01 rna ? GO:0003723 ... P32410 15851032
    2 1yi2:2 (2.65) BS01 rna ? GO:0003735 ... P22452 15851032
    3 1yi2:3 (2.65) BS01 rna ? GO:0000049 ... P32411 15851032
    4 1yi2:3 (2.65) BS02 MG ? GO:0000049 ... P32411 15851032
    5 1yi2:A (2.65) BS01 rna ? GO:0002181 ... P20276 15851032
    6 1yi2:A (2.65) BS02 MG ? GO:0002181 ... P20276 15851032
    7 1yi2:B (2.65) BS01 rna ? GO:0003723 ... P20279 15851032
    8 1yi2:C (2.65) BS01 rna ? GO:0003723 ... P12735 15851032
    9 1yi2:D (2.65) BS01 rna ? GO:0000049 ... P14124 15851032
    10 1yi2:D (2.65) BS02 rna ? GO:0000049 ... P14124 15851032
    11 1yi2:E (2.65) BS01 rna ? GO:0002181 ... P14135 15851032
    12 1yi2:F (2.65) BS01 rna ? GO:0001682 ... P12743 15851032
    13 1yi2:H (2.65) BS01 rna ? GO:0000027 ... P60617 15851032
    14 1yi2:I (2.65) BS01 rna ? GO:0003735 ... P14122 15851032
    15 1yi2:J (2.65) BS01 rna ? GO:0003729 ... P29198 15851032
    16 1yi2:K (2.65) BS01 rna ? GO:0003735 ... P22450 15851032
    17 1yi2:L (2.65) BS01 rna ? GO:0003735 ... P12737 15851032
    18 1yi2:M (2.65) BS01 rna ? GO:0002181 ... P60618 15851032
    19 1yi2:N (2.65) BS01 rna ? GO:0000027 ... P14123 15851032
    20 1yi2:N (2.65) BS02 rna ? GO:0000027 ... P14123 15851032
    21 1yi2:O (2.65) BS01 rna ? GO:0003723 ... P12733 15851032
    22 1yi2:P (2.65) BS01 rna ? GO:0003723 ... P14119 15851032
    23 1yi2:Q (2.65) BS01 rna ? GO:0003735 ... P12734 15851032
    24 1yi2:Q (2.65) BS02 rna ? GO:0003735 ... P12734 15851032
    25 1yi2:R (2.65) BS01 rna ? GO:0002181 ... P10970 15851032
    26 1yi2:S (2.65) BS01 rna ? GO:0000027 ... P12732 15851032
    27 1yi2:T (2.65) BS01 rna ? GO:0002181 ... P10972 15851032
    28 1yi2:T (2.65) BS02 MG ? GO:0002181 ... P10972 15851032
    29 1yi2:U (2.65) BS01 rna ? GO:0003735 ... P14116 15851032
    30 1yi2:V (2.65) BS01 rna ? GO:0003735 ... P10971 15851032
    31 1yi2:W (2.65) BS01 rna ? GO:0000463 ... P14121 15851032
    32 1yi2:W (2.65) BS02 rna ? GO:0000463 ... P14121 15851032
    33 1yi2:X (2.65) BS01 rna ? GO:0002181 ... P18138 15851032
    34 1yi2:Y (2.65) BS01 rna ? GO:0000166 ... P12736 15851032
    35 1yi2:Y (2.65) BS02 MG ? GO:0000166 ... P12736 15851032
    36 1yi2:Z (2.65) BS01 rna ? GO:0003735 ... P60619 15851032
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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