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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 218 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1vy4:AB (2.6) BS01 rna ? GO:0003735 ... P80371 25132179
    2 1vy4:AB (2.6) BS02 MG ? GO:0003735 ... P80371 25132179
    3 1vy4:AC (2.6) BS01 rna ? GO:0003676 ... P80372 25132179
    4 1vy4:AD (2.6) BS01 rna ? GO:0003723 ... P80373 25132179
    5 1vy4:AD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    6 1vy4:AE (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    7 1vy4:AE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    8 1vy4:AF (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    9 1vy4:AG (2.6) BS01 rna ? GO:0000028 ... P17291 25132179
    10 1vy4:AG (2.6) BS02 rna ? GO:0000028 ... P17291 25132179
    11 1vy4:AH (2.6) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    12 1vy4:AI (2.6) BS01 rna ? GO:0000049 ... P80374 25132179
    13 1vy4:AI (2.6) BS02 rna ? GO:0000049 ... P80374 25132179
    14 1vy4:AJ (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    15 1vy4:AK (2.6) BS01 rna ? GO:0003735 ... P80376 25132179
    16 1vy4:AK (2.6) BS02 MG ? GO:0003735 ... P80376 25132179
    17 1vy4:AL (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    18 1vy4:AL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    19 1vy4:AM (2.6) BS01 rna ? GO:0000049 ... P80377 25132179
    20 1vy4:AM (2.6) BS02 rna ? GO:0000049 ... P80377 25132179
    21 1vy4:AM (2.6) BS03 rna ? GO:0000049 ... P80377 25132179
    22 1vy4:AM (2.6) BS04 MG ? GO:0000049 ... P80377 25132179
    23 1vy4:AN (2.6) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    24 1vy4:AN (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    25 1vy4:AO (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    26 1vy4:AO (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    27 1vy4:AP (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    28 1vy4:AQ (2.6) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    29 1vy4:AR (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    30 1vy4:AS (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    31 1vy4:AT (2.6) BS01 rna ? GO:0003723 ... P80380 25132179
    32 1vy4:AT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    33 1vy4:B0 (2.6) BS01 rna ? GO:0003735 ... P60493 25132179
    34 1vy4:B0 (2.6) BS02 rna ? GO:0003735 ... P60493 25132179
    35 1vy4:B0 (2.6) BS03 MG ? GO:0003735 ... P60493 25132179
    36 1vy4:B1 (2.6) BS01 rna ? GO:0003735 ... P60494 25132179
    37 1vy4:B1 (2.6) BS02 rna ? GO:0003735 ... P60494 25132179
    38 1vy4:B2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    39 1vy4:B3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    40 1vy4:B3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    41 1vy4:B4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    42 1vy4:B4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    43 1vy4:B5 (2.6) BS01 rna ? GO:0003735 ... P80339 25132179
    44 1vy4:B5 (2.6) BS02 MG ? GO:0003735 ... P80339 25132179
    45 1vy4:B5 (2.6) BS03 ZN ? GO:0003735 ... P80339 25132179
    46 1vy4:B6 (2.6) BS01 rna ? GO:0000049 ... P35871 25132179
    47 1vy4:B6 (2.6) BS02 ZN ? GO:0000049 ... P35871 25132179
    48 1vy4:B7 (2.6) BS01 rna ? GO:0003735 ... P80340 25132179
    49 1vy4:B7 (2.6) BS02 MG ? GO:0003735 ... P80340 25132179
    50 1vy4:B7 (2.6) BS03 MG ? GO:0003735 ... P80340 25132179
    51 1vy4:B7 (2.6) BS04 MG ? GO:0003735 ... P80340 25132179
    52 1vy4:B8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    53 1vy4:B8 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    54 1vy4:B9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    55 1vy4:B9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    56 1vy4:BD (2.6) BS01 rna ? GO:0002181 ... P60405 25132179
    57 1vy4:BD (2.6) BS02 rna ? GO:0002181 ... P60405 25132179
    58 1vy4:BD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    59 1vy4:BD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    60 1vy4:BD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    61 1vy4:BD (2.6) BS06 MG ? GO:0002181 ... P60405 25132179
    62 1vy4:BD (2.6) BS07 MG ? GO:0002181 ... P60405 25132179
    63 1vy4:BD (2.6) BS08 MG ? GO:0002181 ... P60405 25132179
    64 1vy4:BD (2.6) BS09 MG ? GO:0002181 ... P60405 25132179
    65 1vy4:BD (2.6) BS10 MG ? GO:0002181 ... P60405 25132179
    66 1vy4:BD (2.6) BS11 MG ? GO:0002181 ... P60405 25132179
    67 1vy4:BD (2.6) BS12 MG ? GO:0002181 ... P60405 25132179
    68 1vy4:BD (2.6) BS13 MG ? GO:0002181 ... P60405 25132179
    69 1vy4:BE (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    70 1vy4:BE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    71 1vy4:BF (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    72 1vy4:BF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    73 1vy4:BF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    74 1vy4:BF (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    75 1vy4:BF (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    76 1vy4:BF (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    77 1vy4:BF (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    78 1vy4:BF (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    79 1vy4:BF (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    80 1vy4:BG (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    81 1vy4:BG (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    82 1vy4:BG (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    83 1vy4:BG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    84 1vy4:BG (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    85 1vy4:BH (2.6) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    86 1vy4:BH (2.6) BS02 MG ? GO:0002181 ... P0DOY8 25132179
    87 1vy4:BI (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    88 1vy4:BN (2.6) BS01 rna ? GO:0003729 ... P60488 25132179
    89 1vy4:BN (2.6) BS02 MG ? GO:0003729 ... P60488 25132179
    90 1vy4:BO (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    91 1vy4:BO (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    92 1vy4:BP (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    93 1vy4:BP (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    94 1vy4:BP (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    95 1vy4:BQ (2.6) BS01 rna ? GO:0000049 ... P60489 25132179
    96 1vy4:BQ (2.6) BS02 rna ? GO:0000049 ... P60489 25132179
    97 1vy4:BQ (2.6) BS03 rna ? GO:0000049 ... P60489 25132179
    98 1vy4:BQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    99 1vy4:BQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    100 1vy4:BR (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    101 1vy4:BR (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    102 1vy4:BR (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    103 1vy4:BS (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    104 1vy4:BS (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    105 1vy4:BT (2.6) BS01 rna ? GO:0003735 ... P60490 25132179
    106 1vy4:BT (2.6) BS02 rna ? GO:0003735 ... P60490 25132179
    107 1vy4:BU (2.6) BS01 rna ? GO:0000027 ... P60491 25132179
    108 1vy4:BU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    109 1vy4:BU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    110 1vy4:BU (2.6) BS04 MG ? GO:0000027 ... P60491 25132179
    111 1vy4:BU (2.6) BS05 MG ? GO:0000027 ... P60491 25132179
    112 1vy4:BU (2.6) BS06 MG ? GO:0000027 ... P60491 25132179
    113 1vy4:BV (2.6) BS01 rna ? GO:0003723 ... P60492 25132179
    114 1vy4:BV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    115 1vy4:BV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    116 1vy4:BV (2.6) BS04 MG ? GO:0003723 ... P60492 25132179
    117 1vy4:BV (2.6) BS05 MG ? GO:0003723 ... P60492 25132179
    118 1vy4:BW (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    119 1vy4:BW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    120 1vy4:BX (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    121 1vy4:BX (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    122 1vy4:BY (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    123 1vy4:BY (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    124 1vy4:BZ (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    125 1vy4:BZ (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    126 1vy4:CB (2.6) BS01 rna ? GO:0003735 ... P80371 25132179
    127 1vy4:CC (2.6) BS01 rna ? GO:0003676 ... P80372 25132179
    128 1vy4:CD (2.6) BS01 rna ? GO:0003723 ... P80373 25132179
    129 1vy4:CD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    130 1vy4:CE (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    131 1vy4:CE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    132 1vy4:CF (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    133 1vy4:CF (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    134 1vy4:CG (2.6) BS01 rna ? GO:0000028 ... P17291 25132179
    135 1vy4:CG (2.6) BS02 rna ? GO:0000028 ... P17291 25132179
    136 1vy4:CH (2.6) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    137 1vy4:CI (2.6) BS01 rna ? GO:0000049 ... P80374 25132179
    138 1vy4:CI (2.6) BS02 rna ? GO:0000049 ... P80374 25132179
    139 1vy4:CJ (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    140 1vy4:CJ (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 25132179
    141 1vy4:CK (2.6) BS01 rna ? GO:0003735 ... P80376 25132179
    142 1vy4:CL (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    143 1vy4:CL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    144 1vy4:CM (2.6) BS01 rna ? GO:0000049 ... P80377 25132179
    145 1vy4:CM (2.6) BS02 rna ? GO:0000049 ... P80377 25132179
    146 1vy4:CM (2.6) BS03 rna ? GO:0000049 ... P80377 25132179
    147 1vy4:CN (2.6) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    148 1vy4:CN (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    149 1vy4:CO (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    150 1vy4:CO (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    151 1vy4:CP (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    152 1vy4:CQ (2.6) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    153 1vy4:CR (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    154 1vy4:CS (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    155 1vy4:CT (2.6) BS01 rna ? GO:0003723 ... P80380 25132179
    156 1vy4:CT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    157 1vy4:D0 (2.6) BS01 rna ? GO:0003735 ... P60493 25132179
    158 1vy4:D0 (2.6) BS02 rna ? GO:0003735 ... P60493 25132179
    159 1vy4:D1 (2.6) BS01 rna ? GO:0003735 ... P60494 25132179
    160 1vy4:D1 (2.6) BS02 rna ? GO:0003735 ... P60494 25132179
    161 1vy4:D2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    162 1vy4:D3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    163 1vy4:D3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    164 1vy4:D3 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    165 1vy4:D4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    166 1vy4:D4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    167 1vy4:D5 (2.6) BS01 rna ? GO:0003735 ... P80339 25132179
    168 1vy4:D5 (2.6) BS02 ZN ? GO:0003735 ... P80339 25132179
    169 1vy4:D6 (2.6) BS01 rna ? GO:0000049 ... P35871 25132179
    170 1vy4:D6 (2.6) BS02 ZN ? GO:0000049 ... P35871 25132179
    171 1vy4:D7 (2.6) BS01 rna ? GO:0003735 ... P80340 25132179
    172 1vy4:D8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    173 1vy4:D9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    174 1vy4:D9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    175 1vy4:DD (2.6) BS01 rna ? GO:0002181 ... P60405 25132179
    176 1vy4:DD (2.6) BS02 rna ? GO:0002181 ... P60405 25132179
    177 1vy4:DD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    178 1vy4:DD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    179 1vy4:DD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    180 1vy4:DE (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    181 1vy4:DE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    182 1vy4:DE (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    183 1vy4:DF (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    184 1vy4:DF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    185 1vy4:DF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    186 1vy4:DG (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    187 1vy4:DG (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    188 1vy4:DG (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    189 1vy4:DG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    190 1vy4:DH (2.6) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    191 1vy4:DI (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    192 1vy4:DN (2.6) BS01 rna ? GO:0003729 ... P60488 25132179
    193 1vy4:DO (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    194 1vy4:DO (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    195 1vy4:DP (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    196 1vy4:DQ (2.6) BS01 rna ? GO:0000049 ... P60489 25132179
    197 1vy4:DQ (2.6) BS02 rna ? GO:0000049 ... P60489 25132179
    198 1vy4:DQ (2.6) BS03 rna ? GO:0000049 ... P60489 25132179
    199 1vy4:DQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    200 1vy4:DQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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