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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1utd:A (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    2 1utd:A (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    3 1utd:B (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    4 1utd:B (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    5 1utd:C (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    6 1utd:C (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    7 1utd:D (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    8 1utd:D (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    9 1utd:E (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    10 1utd:E (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    11 1utd:F (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    12 1utd:F (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    13 1utd:G (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    14 1utd:G (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    15 1utd:H (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    16 1utd:H (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    17 1utd:I (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    18 1utd:I (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    19 1utd:J (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    20 1utd:J (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    21 1utd:K (2.1) BS01 TRP ? GO:0003723 ... Q9X6J6 15050822
    22 1utd:K (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    23 1utd:L (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    24 1utd:L (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    25 1utd:L (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    26 1utd:M (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    27 1utd:M (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    28 1utd:M (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    29 1utd:N (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    30 1utd:N (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    31 1utd:N (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    32 1utd:O (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    33 1utd:O (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    34 1utd:O (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    35 1utd:P (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    36 1utd:P (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    37 1utd:P (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    38 1utd:Q (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    39 1utd:Q (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    40 1utd:Q (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    41 1utd:R (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    42 1utd:R (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    43 1utd:R (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    44 1utd:S (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    45 1utd:S (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    46 1utd:S (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    47 1utd:T (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    48 1utd:T (2.1) BS02 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    49 1utd:T (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    50 1utd:T (2.1) BS04 TRP ? GO:0003723 ... Q9X6J6 15050822
    51 1utd:U (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    52 1utd:U (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    53 1utd:U (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    54 1utd:V (2.1) BS01 rna ? GO:0003723 ... Q9X6J6 15050822 PDBbind: Kd=0.31nM
    55 1utd:V (2.1) BS02 TRP ? GO:0003723 ... Q9X6J6 15050822
    56 1utd:V (2.1) BS03 TRP ? GO:0003723 ... Q9X6J6 15050822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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