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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1m90:1 (2.8) BS01 rna ? GO:0003735 ... P60619 12185246
    2 1m90:2 (2.8) BS01 rna ? GO:0003723 ... P32410 12185246
    3 1m90:3 (2.8) BS01 rna ? GO:0003735 ... P22452 12185246
    4 1m90:4 (2.8) BS01 rna ? GO:0000049 ... P32411 12185246
    5 1m90:4 (2.8) BS02 MG ? GO:0000049 ... P32411 12185246
    6 1m90:C (2.8) BS01 rna ? GO:0002181 ... P20276 12185246
    7 1m90:D (2.8) BS01 rna ? GO:0003723 ... P20279 12185246
    8 1m90:E (2.8) BS01 rna ? GO:0003723 ... P12735 12185246
    9 1m90:F (2.8) BS01 rna ? GO:0000049 ... P14124 12185246
    10 1m90:F (2.8) BS02 rna ? GO:0000049 ... P14124 12185246
    11 1m90:G (2.8) BS01 rna ? GO:0002181 ... P14135 12185246
    12 1m90:H (2.8) BS01 rna ? GO:0001682 ... P12743 12185246
    13 1m90:J (2.8) BS01 rna ? GO:0000027 ... P60617 12185246
    14 1m90:K (2.8) BS01 rna ? GO:0003729 ... P29198 12185246
    15 1m90:L (2.8) BS01 rna ? GO:0003735 ... P22450 12185246
    16 1m90:M (2.8) BS01 rna ? GO:0003735 ... P12737 12185246
    17 1m90:N (2.8) BS01 rna ? GO:0002181 ... P60618 12185246
    18 1m90:O (2.8) BS01 rna ? GO:0000027 ... P14123 12185246
    19 1m90:O (2.8) BS02 rna ? GO:0000027 ... P14123 12185246
    20 1m90:P (2.8) BS01 rna ? GO:0003723 ... P12733 12185246
    21 1m90:Q (2.8) BS01 rna ? GO:0003723 ... P14119 12185246
    22 1m90:R (2.8) BS01 rna ? GO:0003735 ... P12734 12185246
    23 1m90:R (2.8) BS02 rna ? GO:0003735 ... P12734 12185246
    24 1m90:S (2.8) BS01 rna ? GO:0002181 ... P10970 12185246
    25 1m90:T (2.8) BS01 rna ? GO:0000027 ... P12732 12185246
    26 1m90:U (2.8) BS01 rna ? GO:0002181 ... P10972 12185246
    27 1m90:U (2.8) BS02 MG ? GO:0002181 ... P10972 12185246
    28 1m90:V (2.8) BS01 rna ? GO:0003735 ... P14116 12185246
    29 1m90:W (2.8) BS01 rna ? GO:0003735 ... P10971 12185246
    30 1m90:X (2.8) BS01 rna ? GO:0000463 ... P14121 12185246
    31 1m90:X (2.8) BS02 rna ? GO:0000463 ... P14121 12185246
    32 1m90:Y (2.8) BS01 rna ? GO:0002181 ... P18138 12185246
    33 1m90:Z (2.8) BS01 rna ? GO:0000166 ... P12736 12185246
    34 1m90:Z (2.8) BS02 MG ? GO:0000166 ... P12736 12185246
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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