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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1m1y:A (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    2 1m1y:A (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    3 1m1y:B (3.2) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    4 1m1y:B (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    5 1m1y:B (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    6 1m1y:C (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    7 1m1y:C (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    8 1m1y:D (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    9 1m1y:D (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    10 1m1y:D (3.2) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    11 1m1y:E (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    12 1m1y:F (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    13 1m1y:G (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    14 1m1y:H (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    15 1m1y:I (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    16 1m1y:I (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    17 1m1y:J (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    18 1m1y:J (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    19 1m1y:J (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    20 1m1y:K (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    21 1m1y:K (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    22 1m1y:L (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    23 1m1y:L (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    24 1m1y:L (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25 1m1y:M (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    26 1m1y:N (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    27 1m1y:O (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    28 1m1y:P (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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