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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1m1k:1 (3.2) BS01 rna ? GO:0003735 ... P60619 12150912
    2 1m1k:1 (3.2) BS02 MG ? GO:0003735 ... P60619 12150912
    3 1m1k:2 (3.2) BS01 rna ? GO:0003723 ... P32410 12150912
    4 1m1k:3 (3.2) BS01 rna ? GO:0003735 ... P22452 12150912
    5 1m1k:4 (3.2) BS01 rna ? GO:0000049 ... P32411 12150912
    6 1m1k:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12150912
    7 1m1k:C (3.2) BS01 rna ? GO:0002181 ... P20276 12150912
    8 1m1k:C (3.2) BS02 MG ? GO:0002181 ... P20276 12150912
    9 1m1k:D (3.2) BS01 rna ? GO:0003723 ... P20279 12150912
    10 1m1k:E (3.2) BS01 rna ? GO:0003723 ... P12735 12150912
    11 1m1k:F (3.2) BS01 rna ? GO:0000049 ... P14124 12150912
    12 1m1k:F (3.2) BS02 rna ? GO:0000049 ... P14124 12150912
    13 1m1k:G (3.2) BS01 rna ? GO:0002181 ... P14135 12150912
    14 1m1k:H (3.2) BS01 rna ? GO:0001682 ... P12743 12150912
    15 1m1k:J (3.2) BS01 rna ? GO:0000027 ... P60617 12150912
    16 1m1k:K (3.2) BS01 rna ? GO:0003729 ... P29198 12150912
    17 1m1k:L (3.2) BS01 rna ? GO:0003735 ... P22450 12150912
    18 1m1k:M (3.2) BS01 rna ? GO:0003735 ... P12737 12150912
    19 1m1k:N (3.2) BS01 rna ? GO:0002181 ... P60618 12150912
    20 1m1k:O (3.2) BS01 rna ? GO:0000027 ... P14123 12150912
    21 1m1k:O (3.2) BS02 rna ? GO:0000027 ... P14123 12150912
    22 1m1k:P (3.2) BS01 rna ? GO:0003723 ... P12733 12150912
    23 1m1k:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12150912
    24 1m1k:R (3.2) BS01 rna ? GO:0003735 ... P12734 12150912
    25 1m1k:R (3.2) BS02 rna ? GO:0003735 ... P12734 12150912
    26 1m1k:S (3.2) BS01 rna ? GO:0002181 ... P10970 12150912
    27 1m1k:T (3.2) BS01 rna ? GO:0000027 ... P12732 12150912
    28 1m1k:U (3.2) BS01 rna ? GO:0002181 ... P10972 12150912
    29 1m1k:U (3.2) BS02 MG ? GO:0002181 ... P10972 12150912
    30 1m1k:V (3.2) BS01 rna ? GO:0003735 ... P14116 12150912
    31 1m1k:W (3.2) BS01 rna ? GO:0003735 ... P10971 12150912
    32 1m1k:X (3.2) BS01 rna ? GO:0000463 ... P14121 12150912
    33 1m1k:X (3.2) BS02 rna ? GO:0000463 ... P14121 12150912
    34 1m1k:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12150912
    35 1m1k:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12150912
    36 1m1k:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12150912
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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