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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8whx:1 (2.8) BS01 rna ? GO:0003735 ... A0QV03 38245551
    2 8whx:2 (2.8) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    3 8whx:3 (2.8) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    4 8whx:3 (2.8) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    5 8whx:4 (2.8) BS01 rna ? GO:0003735 ... A0R215 38245551
    6 8whx:5 (2.8) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    7 8whx:6 (2.8) BS01 rna ? GO:0003735 ... A0QS39 38245551
    8 8whx:7 (2.8) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    9 8whx:8 (2.8) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    10 8whx:E (2.8) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    11 8whx:F (2.8) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    12 8whx:G (2.8) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    13 8whx:H (2.8) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    14 8whx:H (2.8) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    15 8whx:I (2.8) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    16 8whx:J (2.8) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    17 8whx:M (2.8) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    18 8whx:N (2.8) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    19 8whx:N (2.8) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    20 8whx:O (2.8) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    21 8whx:Q (2.8) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    22 8whx:R (2.8) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    23 8whx:R (2.8) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    24 8whx:S (2.8) BS01 rna ? GO:0003735 ... A0QV42 38245551
    25 8whx:S (2.8) BS02 rna ? GO:0003735 ... A0QV42 38245551
    26 8whx:T (2.8) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    27 8whx:U (2.8) BS01 rna ? GO:0003723 ... A0R151 38245551
    28 8whx:V (2.8) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    29 8whx:W (2.8) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    30 8whx:X (2.8) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    31 8whx:Z (2.8) BS01 rna ? GO:0003735 ... A0R150 38245551
    32 8whx:c (2.8) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    33 8whx:d (2.8) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    34 8whx:e (2.8) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    35 8whx:f (2.8) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    36 8whx:g (2.8) BS01 rna ? GO:0003735 ... N/A 38245551
    37 8whx:g (2.8) BS02 rna ? GO:0003735 ... N/A 38245551
    38 8whx:h (2.8) BS01 rna ? GO:0000028 ... A0QS97 38245551
    39 8whx:i (2.8) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    40 8whx:j (2.8) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    41 8whx:k (2.8) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    42 8whx:l (2.8) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    43 8whx:m (2.8) BS01 rna ? GO:0000049 ... A0QS96 38245551
    44 8whx:n (2.8) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    45 8whx:o (2.8) BS01 rna ? GO:0003735 ... A0R550 38245551
    46 8whx:p (2.8) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    47 8whx:p (2.8) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    48 8whx:q (2.8) BS01 rna ? GO:0003735 ... A0QV37 38245551
    49 8whx:r (2.8) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    50 8whx:s (2.8) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    51 8whx:t (2.8) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    52 8whx:u (2.8) BS01 rna ? GO:0003723 ... A0R102 38245551
    53 8whx:v (2.8) BS01 rna ? N/A A0QR10 38245551
    54 8whx:w (2.8) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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