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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 167 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8wdv:0 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    2 8wdv:0 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    3 8wdv:0 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    4 8wdv:1 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    5 8wdv:1 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    6 8wdv:1 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    7 8wdv:1 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    8 8wdv:1 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    9 8wdv:2 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    10 8wdv:2 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    11 8wdv:2 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    12 8wdv:3 (2.24) BS01 CRT ? GO:0005886 ... D3RP67 38347078
    13 8wdv:3 (2.24) BS02 BCL ? GO:0005886 ... D3RP67 38347078
    14 8wdv:3 (2.24) BS03 BCL ? GO:0005886 ... D3RP67 38347078
    15 8wdv:3 (2.24) BS04 CRT ? GO:0005886 ... D3RP67 38347078
    16 8wdv:3 (2.24) BS05 BCL ? GO:0005886 ... D3RP67 38347078
    17 8wdv:4 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    18 8wdv:4 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    19 8wdv:4 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    20 8wdv:5 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    21 8wdv:5 (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    22 8wdv:5 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    23 8wdv:5 (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    24 8wdv:6 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    25 8wdv:6 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    26 8wdv:6 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    27 8wdv:7 (2.24) BS01 UQ8 ? GO:0005886 ... D3RP69 38347078
    28 8wdv:7 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    29 8wdv:7 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    30 8wdv:7 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    31 8wdv:7 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    32 8wdv:7 (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    33 8wdv:8 (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    34 8wdv:8 (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    35 8wdv:8 (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    36 8wdv:9 (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    37 8wdv:9 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    38 8wdv:9 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    39 8wdv:9 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    40 8wdv:9 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    41 8wdv:A (2.24) BS01 BCL ? GO:0005886 ... D3RP69 38347078
    42 8wdv:A (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    43 8wdv:A (2.24) BS03 CRT ? GO:0005886 ... D3RP69 38347078
    44 8wdv:A (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    45 8wdv:A (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    46 8wdv:B (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    47 8wdv:B (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    48 8wdv:B (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    49 8wdv:C (2.24) BS01 HEM ? GO:0005506 ... O82947 38347078
    50 8wdv:C (2.24) BS02 HEM ? GO:0005506 ... O82947 38347078
    51 8wdv:C (2.24) BS03 HEM ? GO:0005506 ... O82947 38347078
    52 8wdv:C (2.24) BS04 HEM ? GO:0005506 ... O82947 38347078
    53 8wdv:C (2.24) BS05 MG ? GO:0005506 ... O82947 38347078
    54 8wdv:C (2.24) BS06 Z41 ? GO:0005506 ... O82947 38347078
    55 8wdv:D (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    56 8wdv:D (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    57 8wdv:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    58 8wdv:D (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    59 8wdv:D (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    60 8wdv:D (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    61 8wdv:E (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    62 8wdv:E (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    63 8wdv:E (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    64 8wdv:F (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    65 8wdv:F (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    66 8wdv:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    67 8wdv:F (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    68 8wdv:F (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    69 8wdv:F (2.24) BS06 BCL ? GO:0005886 ... D3RP74 38347078
    70 8wdv:F (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    71 8wdv:G (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    72 8wdv:G (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    73 8wdv:G (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    74 8wdv:I (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    75 8wdv:I (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    76 8wdv:I (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    77 8wdv:I (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    78 8wdv:I (2.24) BS05 BCL ? GO:0005886 ... D3RP69 38347078
    79 8wdv:I (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    80 8wdv:J (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    81 8wdv:J (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    82 8wdv:J (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    83 8wdv:K (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    84 8wdv:K (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    85 8wdv:K (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    86 8wdv:K (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    87 8wdv:K (2.24) BS05 BCL ? GO:0005886 ... D3RP69 38347078
    88 8wdv:K (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    89 8wdv:L (2.24) BS01 Z41 ? GO:0009772 ... P51762 38347078
    90 8wdv:L (2.24) BS02 BCL ? GO:0009772 ... P51762 38347078
    91 8wdv:L (2.24) BS03 BPH ? GO:0009772 ... P51762 38347078
    92 8wdv:L (2.24) BS04 UQ8 ? GO:0009772 ... P51762 38347078
    93 8wdv:L (2.24) BS05 UQ8 ? GO:0009772 ... P51762 38347078
    94 8wdv:L (2.24) BS06 BCL ? GO:0009772 ... P51762 38347078
    95 8wdv:L (2.24) BS07 UQ8 ? GO:0009772 ... P51762 38347078
    96 8wdv:L (2.24) BS08 FE ? GO:0009772 ... P51762 38347078
    97 8wdv:L (2.24) BS09 BCL ? GO:0009772 ... P51762 38347078
    98 8wdv:L (2.24) BS10 BPH ? GO:0009772 ... P51762 38347078
    99 8wdv:L (2.24) BS11 MQ8 ? GO:0009772 ... P51762 38347078
    100 8wdv:M (2.24) BS01 BPH ? GO:0009772 ... P51763 38347078
    101 8wdv:M (2.24) BS02 BCL ? GO:0009772 ... P51763 38347078
    102 8wdv:M (2.24) BS03 UQ8 ? GO:0009772 ... P51763 38347078
    103 8wdv:M (2.24) BS04 FE ? GO:0009772 ... P51763 38347078
    104 8wdv:M (2.24) BS05 BCL ? GO:0009772 ... P51763 38347078
    105 8wdv:M (2.24) BS06 BCL ? GO:0009772 ... P51763 38347078
    106 8wdv:M (2.24) BS07 BPH ? GO:0009772 ... P51763 38347078
    107 8wdv:M (2.24) BS08 MQ8 ? GO:0009772 ... P51763 38347078
    108 8wdv:M (2.24) BS09 CRT ? GO:0009772 ... P51763 38347078
    109 8wdv:N (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    110 8wdv:N (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    111 8wdv:N (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    112 8wdv:O (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    113 8wdv:O (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    114 8wdv:O (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    115 8wdv:O (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    116 8wdv:O (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    117 8wdv:O (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    118 8wdv:P (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    119 8wdv:P (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    120 8wdv:P (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    121 8wdv:Q (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    122 8wdv:Q (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    123 8wdv:Q (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    124 8wdv:Q (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    125 8wdv:Q (2.24) BS05 BCL ? GO:0005886 ... D3RP69 38347078
    126 8wdv:Q (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    127 8wdv:R (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    128 8wdv:R (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    129 8wdv:R (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    130 8wdv:S (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    131 8wdv:S (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    132 8wdv:S (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    133 8wdv:S (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    134 8wdv:S (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    135 8wdv:S (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    136 8wdv:T (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    137 8wdv:T (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    138 8wdv:T (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    139 8wdv:U (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    140 8wdv:U (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    141 8wdv:U (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    142 8wdv:U (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    143 8wdv:U (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    144 8wdv:U (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    145 8wdv:V (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    146 8wdv:V (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    147 8wdv:V (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    148 8wdv:W (2.24) BS01 UQ8 ? GO:0005886 ... D3RP74 38347078
    149 8wdv:W (2.24) BS02 CRT ? GO:0005886 ... D3RP74 38347078
    150 8wdv:W (2.24) BS03 BCL ? GO:0005886 ... D3RP74 38347078
    151 8wdv:W (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    152 8wdv:W (2.24) BS05 BCL ? GO:0005886 ... D3RP74 38347078
    153 8wdv:W (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    154 8wdv:W (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    155 8wdv:X (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    156 8wdv:X (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    157 8wdv:X (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    158 8wdv:Y (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    159 8wdv:Y (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    160 8wdv:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    161 8wdv:Y (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    162 8wdv:Y (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    163 8wdv:Y (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    164 8wdv:Z (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    165 8wdv:Z (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    166 8wdv:Z (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    167 8wdv:Z (2.24) BS04 BCL ? GO:0005886 ... D3RP68 38347078
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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