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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8pw7:1 (3.5) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    2 8pw7:1 (3.5) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    3 8pw7:2 (3.5) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    4 8pw7:3 (3.5) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    5 8pw7:3 (3.5) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    6 8pw7:3 (3.5) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    7 8pw7:6 (3.5) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    8 8pw7:7 (3.5) BS01 ZN ? GO:0001822 ... P52503 38575788
    9 8pw7:9 (3.5) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    10 8pw7:9 (3.5) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    11 8pw7:C (3.5) BS01 HEM ? GO:0001666 ... P00158 38575788
    12 8pw7:C (3.5) BS02 HEM ? GO:0001666 ... P00158 38575788
    13 8pw7:D (3.5) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    14 8pw7:D1 (3.5) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    15 8pw7:E (3.5) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    16 8pw7:N (3.5) BS01 HEM ? GO:0001666 ... P00158 38575788
    17 8pw7:N (3.5) BS02 HEM ? GO:0001666 ... P00158 38575788
    18 8pw7:O (3.5) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    19 8pw7:O1 (3.5) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    20 8pw7:P (3.5) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    21 8pw7:P1 (3.5) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    22 8pw7:T1 (3.5) BS01 ZMP ? GO:0005654 ... Q9CR21 38575788
    23 8pw7:W1 (3.5) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    24 8pw7:n (3.5) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    25 8pw7:n (3.5) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    26 8pw7:n (3.5) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    27 8pw7:n1 (3.5) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    28 8pw7:o (3.5) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    29 8pw7:o (3.5) BS02 CUA 7.1.1.9 GO:0001666 ... P00405 38575788
    30 8pw7:s (3.5) BS01 ZN ? GO:0005739 ... P19536 38575788
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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