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BioLiP
Download all results in tab-seperated text for 76 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ipy:1 (3.2) BS01 rna ? GO:0000463 ... Q6DKI1 37491604
    2 8ipy:1 (3.2) BS02 rna ? GO:0000463 ... Q6DKI1 37491604
    3 8ipy:4 (3.2) BS01 rna ? GO:0000079 ... Q9BZE4 37491604
    4 8ipy:4 (3.2) BS02 rna ? GO:0000079 ... Q9BZE4 37491604
    5 8ipy:6 (3.2) BS01 rna ? GO:0000054 ... P56537 37491604
    6 8ipy:7 (3.2) BS01 rna ? GO:0003735 ... Q9UHA3 37491604
    7 8ipy:9 (3.2) BS01 rna ? GO:0003676 ... O00488 37491604
    8 8ipy:A (3.2) BS01 rna ? GO:0002181 ... P47914 37491604
    9 8ipy:B (3.2) BS01 rna ? GO:0002181 ... P39023 37491604
    10 8ipy:C (3.2) BS01 rna ? GO:0000027 ... P62913 37491604
    11 8ipy:C (3.2) BS02 rna ? GO:0000027 ... P62913 37491604
    12 8ipy:D (3.2) BS01 rna ? GO:0002181 ... P36578 37491604
    13 8ipy:D (3.2) BS02 rna ? GO:0002181 ... P36578 37491604
    14 8ipy:E (3.2) BS01 rna ? GO:0002181 ... P62888 37491604
    15 8ipy:F (3.2) BS01 rna ? GO:0002181 ... P49207 37491604
    16 8ipy:G (3.2) BS01 rna ? GO:0000470 ... P62424 37491604
    17 8ipy:G (3.2) BS02 rna ? GO:0000470 ... P62424 37491604
    18 8ipy:H (3.2) BS01 rna ? GO:0000463 ... P42766 37491604
    19 8ipy:H (3.2) BS02 rna ? GO:0000463 ... P42766 37491604
    20 8ipy:I (3.2) BS01 rna ? GO:0002181 ... P32969 37491604
    21 8ipy:J (3.2) BS01 rna ? GO:0000460 ... O95478 37491604
    22 8ipy:K (3.2) BS01 rna ? GO:0002181 ... Q9Y3U8 37491604
    23 8ipy:L (3.2) BS01 rna ? GO:0002181 ... P46776 37491604
    24 8ipy:M (3.2) BS01 rna ? GO:0002181 ... P61927 37491604
    25 8ipy:M (3.2) BS02 rna ? GO:0002181 ... P61927 37491604
    26 8ipy:N (3.2) BS01 rna ? GO:0000055 ... Q9NVU7 37491604
    27 8ipy:O (3.2) BS01 rna ? GO:0001501 ... P63173 37491604
    28 8ipy:P (3.2) BS01 rna ? GO:0002181 ... P62891 37491604
    29 8ipy:P (3.2) BS02 rna ? GO:0002181 ... P62891 37491604
    30 8ipy:Q (3.2) BS01 rna ? GO:0001824 ... P26373 37491604
    31 8ipy:Q (3.2) BS02 rna ? GO:0001824 ... P26373 37491604
    32 8ipy:R (3.2) BS01 rna ? GO:0000027 ... P46777 37491604
    33 8ipy:R (3.2) BS02 rna ? GO:0000027 ... P46777 37491604
    34 8ipy:S (3.2) BS01 rna ? GO:0002181 ... P50914 37491604
    35 8ipy:T (3.2) BS01 rna ? GO:0002181 ... P46778 37491604
    36 8ipy:T (3.2) BS02 rna ? GO:0002181 ... P46778 37491604
    37 8ipy:U (3.2) BS01 rna ? GO:0002181 ... P61313 37491604
    38 8ipy:U (3.2) BS02 rna ? GO:0002181 ... P61313 37491604
    39 8ipy:V (3.2) BS01 rna ? GO:0002181 ... P40429 37491604
    40 8ipy:W (3.2) BS01 rna ? GO:0000027 ... Q9NVX2 37491604
    41 8ipy:X (3.2) BS01 rna ? GO:0002181 ... P61513 37491604
    42 8ipy:Y (3.2) BS01 rna ? GO:0002181 ... P18621 37491604
    43 8ipy:Y (3.2) BS02 rna ? GO:0002181 ... P18621 37491604
    44 8ipy:Z (3.2) BS01 rna ? GO:0002181 ... Q07020 37491604
    45 8ipy:a (3.2) BS01 rna ? GO:0002181 ... P84098 37491604
    46 8ipy:b (3.2) BS01 rna ? GO:0002181 ... Q02543 37491604
    47 8ipy:b (3.2) BS02 rna ? GO:0002181 ... Q02543 37491604
    48 8ipy:c (3.2) BS01 rna ? GO:0000462 ... O76021 37491604
    49 8ipy:d (3.2) BS01 rna ? GO:0002181 ... P35268 37491604
    50 8ipy:e (3.2) BS01 rna ? GO:0000122 ... P62829 37491604
    51 8ipy:f (3.2) BS01 rna ? GO:0000027 ... Q9NZM5 37491604
    52 8ipy:f (3.2) BS02 rna ? GO:0000027 ... Q9NZM5 37491604
    53 8ipy:g (3.2) BS01 rna ? GO:0000027 ... P62750 37491604
    54 8ipy:g (3.2) BS02 rna ? GO:0000027 ... P62750 37491604
    55 8ipy:h (3.2) BS01 rna ? GO:0002181 ... P61254 37491604
    56 8ipy:h (3.2) BS02 rna ? GO:0002181 ... P61254 37491604
    57 8ipy:i (3.2) BS01 rna ? GO:0002181 ... P61353 37491604
    58 8ipy:j (3.2) BS01 rna ? GO:0002181 ... P62899 37491604
    59 8ipy:k (3.2) BS01 rna ? GO:0002181 ... P62910 37491604
    60 8ipy:l (3.2) BS01 rna ? GO:0002181 ... P46779 37491604
    61 8ipy:m (3.2) BS01 rna ? GO:0002181 ... P62917 37491604
    62 8ipy:n (3.2) BS01 rna ? GO:0000049 ... P18077 37491604
    63 8ipy:o (3.2) BS01 rna ? GO:0000027 ... Q02878 37491604
    64 8ipy:p (3.2) BS01 rna ? GO:0000463 ... P18124 37491604
    65 8ipy:p (3.2) BS02 rna ? GO:0000463 ... P18124 37491604
    66 8ipy:q (3.2) BS01 rna ? GO:0000463 ... O00541 37491604
    67 8ipy:q (3.2) BS02 rna ? GO:0000463 ... O00541 37491604
    68 8ipy:r (3.2) BS01 rna ? GO:0003723 ... Q9H6F5 37491604
    69 8ipy:r (3.2) BS02 rna ? GO:0003723 ... Q9H6F5 37491604
    70 8ipy:t (3.2) BS01 rna ? GO:0000463 ... Q9BYG3 37491604
    71 8ipy:u (3.2) BS01 rna ? GO:0003723 ... Q9BVP2 37491604
    72 8ipy:v (3.2) BS01 rna ? GO:0000027 ... Q9UKD2 37491604
    73 8ipy:w (3.2) BS01 rna ? GO:0003723 ... Q13823 37491604
    74 8ipy:w (3.2) BS02 GTP ? GO:0003723 ... Q13823 37491604
    75 8ipy:y (3.2) BS01 rna ? GO:0002181 ... P30050 37491604
    76 8ipy:z (3.2) BS01 rna ? GO:0001099 ... Q9BRT6 37491604
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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