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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 404 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8i7r:AB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    2 8i7r:AB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    3 8i7r:AC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    4 8i7r:AD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    5 8i7r:AD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    6 8i7r:AE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    7 8i7r:AF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    8 8i7r:AF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    9 8i7r:AG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    10 8i7r:AH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    11 8i7r:AH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    12 8i7r:AI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    13 8i7r:AJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    14 8i7r:AJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    15 8i7r:AK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    16 8i7r:AL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    17 8i7r:AL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    18 8i7r:AM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    19 8i7r:BB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    20 8i7r:BB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    21 8i7r:BC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    22 8i7r:BD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    23 8i7r:BD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    24 8i7r:BE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    25 8i7r:BF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    26 8i7r:BF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    27 8i7r:BG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    28 8i7r:BH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    29 8i7r:BH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    30 8i7r:BI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    31 8i7r:BJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    32 8i7r:BJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    33 8i7r:BK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    34 8i7r:BL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    35 8i7r:BL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    36 8i7r:BM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    37 8i7r:CB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    38 8i7r:CB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    39 8i7r:CC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    40 8i7r:CD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    41 8i7r:CD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    42 8i7r:CE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    43 8i7r:CF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    44 8i7r:CF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    45 8i7r:CG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    46 8i7r:CH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    47 8i7r:CH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    48 8i7r:CI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    49 8i7r:CJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    50 8i7r:CJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    51 8i7r:CK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    52 8i7r:CL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    53 8i7r:CL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    54 8i7r:CM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    55 8i7r:DA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    56 8i7r:DB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    57 8i7r:DB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    58 8i7r:DC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    59 8i7r:DD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    60 8i7r:DD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    61 8i7r:DE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    62 8i7r:DF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    63 8i7r:DF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    64 8i7r:DG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    65 8i7r:DH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    66 8i7r:DH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    67 8i7r:DI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    68 8i7r:DJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    69 8i7r:DJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    70 8i7r:DK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    71 8i7r:DL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    72 8i7r:EA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    73 8i7r:EB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    74 8i7r:EB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    75 8i7r:EC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    76 8i7r:ED (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    77 8i7r:ED (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    78 8i7r:EE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    79 8i7r:EF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    80 8i7r:EF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    81 8i7r:EG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    82 8i7r:EH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    83 8i7r:EH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    84 8i7r:EI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    85 8i7r:EJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    86 8i7r:EJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    87 8i7r:EK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    88 8i7r:EL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    89 8i7r:FA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    90 8i7r:FB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    91 8i7r:FB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    92 8i7r:FC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    93 8i7r:FD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    94 8i7r:FE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    95 8i7r:FF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    96 8i7r:FF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    97 8i7r:FG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    98 8i7r:FH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    99 8i7r:FH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    100 8i7r:FI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    101 8i7r:FJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    102 8i7r:FJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    103 8i7r:FK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    104 8i7r:FL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    105 8i7r:Fc (6.5) BS01 peptide ? GO:0003674 ... G5E8A8 37989994
    106 8i7r:GA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    107 8i7r:GB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    108 8i7r:GB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    109 8i7r:GC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    110 8i7r:GD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    111 8i7r:GD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    112 8i7r:GE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    113 8i7r:GF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    114 8i7r:GF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    115 8i7r:GG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    116 8i7r:GH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    117 8i7r:GH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    118 8i7r:GI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    119 8i7r:GJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    120 8i7r:GJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    121 8i7r:GK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    122 8i7r:GL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    123 8i7r:HA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    124 8i7r:HB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    125 8i7r:HB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    126 8i7r:HC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    127 8i7r:HD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    128 8i7r:HD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    129 8i7r:HE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    130 8i7r:HF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    131 8i7r:HF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    132 8i7r:HG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    133 8i7r:HH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    134 8i7r:HH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    135 8i7r:HI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    136 8i7r:HJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    137 8i7r:HJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    138 8i7r:HK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    139 8i7r:HL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    140 8i7r:IA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    141 8i7r:IB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    142 8i7r:IB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    143 8i7r:IC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    144 8i7r:ID (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    145 8i7r:ID (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    146 8i7r:IE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    147 8i7r:IF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    148 8i7r:IF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    149 8i7r:IG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    150 8i7r:IH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    151 8i7r:IH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    152 8i7r:II (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    153 8i7r:IJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    154 8i7r:IJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    155 8i7r:IK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    156 8i7r:IL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    157 8i7r:IL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    158 8i7r:IM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    159 8i7r:JA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    160 8i7r:JB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    161 8i7r:JB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    162 8i7r:JC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    163 8i7r:JD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    164 8i7r:JD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    165 8i7r:JE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    166 8i7r:JF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    167 8i7r:JF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    168 8i7r:JG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    169 8i7r:JH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    170 8i7r:JH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    171 8i7r:JI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    172 8i7r:JJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    173 8i7r:JJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    174 8i7r:JK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    175 8i7r:JL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    176 8i7r:KA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    177 8i7r:KB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    178 8i7r:KB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    179 8i7r:KC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    180 8i7r:KD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    181 8i7r:KD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    182 8i7r:KE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    183 8i7r:KF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    184 8i7r:KF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    185 8i7r:KG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    186 8i7r:KH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    187 8i7r:KH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    188 8i7r:KI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    189 8i7r:KJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    190 8i7r:KJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    191 8i7r:KK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    192 8i7r:KL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    193 8i7r:LA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    194 8i7r:LB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    195 8i7r:LB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    196 8i7r:LC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    197 8i7r:LD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    198 8i7r:LD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    199 8i7r:LE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    200 8i7r:LF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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