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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8fmg:A (1.79) BS01 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    2 8fmg:A (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    3 8fmg:A (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    4 8fmg:B (1.79) BS01 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    5 8fmg:B (1.79) BS02 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    6 8fmg:B (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    7 8fmg:C (1.79) BS01 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    8 8fmg:C (1.79) BS02 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    9 8fmg:C (1.79) BS03 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    10 8fmg:C (1.79) BS04 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    11 8fmg:D (1.79) BS01 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    12 8fmg:D (1.79) BS02 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    13 8fmg:D (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    14 8fmg:E (1.79) BS01 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    15 8fmg:E (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    16 8fmg:E (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    17 8fmg:F (1.79) BS01 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    18 8fmg:F (1.79) BS02 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    19 8fmg:F (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    20 8fmg:G (1.79) BS01 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    21 8fmg:G (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    22 8fmg:G (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    23 8fmg:H (1.79) BS01 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    24 8fmg:H (1.79) BS02 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    25 8fmg:H (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    26 8fmg:K (1.79) BS01 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    27 8fmg:K (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    28 8fmg:K (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    29 8fmg:L (1.79) BS01 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    30 8fmg:L (1.79) BS02 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    31 8fmg:L (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    32 8fmg:M (1.79) BS01 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    33 8fmg:M (1.79) BS02 MG ? GO:0046872 ... A0A2P0QGK5 38321146
    34 8fmg:M (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    35 8fmg:N (1.79) BS01 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    36 8fmg:N (1.79) BS02 ZN ? GO:0046872 ... A0A2P0QGK5 38321146
    37 8fmg:N (1.79) BS03 Y4F ? GO:0046872 ... A0A2P0QGK5 38321146
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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