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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8ch6:1 (5.9) BS01 rna ? GO:0000245 ... P62304 37165190
    2 8ch6:2 (5.9) BS01 rna ? GO:0000387 ... P62306 37165190
    3 8ch6:3 (5.9) BS01 rna ? GO:0000243 ... P62318 37165190
    4 8ch6:4 (5.9) BS01 rna ? GO:0000245 ... P62316 37165190
    5 8ch6:5 (5.9) BS01 rna ? GO:0000243 ... P62314 37165190
    6 8ch6:8 (5.9) BS01 rna ? GO:0000387 ... P14678 37165190
    7 8ch6:9 (5.9) BS01 rna ? GO:0000245 ... P62308 37165190
    8 8ch6:C (5.9) BS01 rna ? GO:0000245 ... O75533 37165190
    9 8ch6:C (5.9) BS02 rna ? GO:0000245 ... O75533 37165190
    10 8ch6:D (5.9) BS01 rna ? GO:0000398 ... Q7RTV0 37165190
    11 8ch6:D (5.9) BS02 ZN ? GO:0000398 ... Q7RTV0 37165190
    12 8ch6:D (5.9) BS03 ZN ? GO:0000398 ... Q7RTV0 37165190
    13 8ch6:E (5.9) BS01 rna ? GO:0000398 ... Q13435 37165190
    14 8ch6:E (5.9) BS02 rna ? GO:0000398 ... Q13435 37165190
    15 8ch6:E (5.9) BS03 rna ? GO:0000398 ... Q13435 37165190
    16 8ch6:I (5.9) BS01 rna ? GO:0000245 ... Q15428 37165190
    17 8ch6:I (5.9) BS02 rna ? GO:0000245 ... Q15428 37165190
    18 8ch6:I (5.9) BS03 rna ? GO:0000245 ... Q15428 37165190
    19 8ch6:I (5.9) BS04 rna ? GO:0000245 ... Q15428 37165190
    20 8ch6:I (5.9) BS05 ZN ? GO:0000245 ... Q15428 37165190
    21 8ch6:J (5.9) BS01 rna ? GO:0000375 ... Q12874 37165190
    22 8ch6:J (5.9) BS02 rna ? GO:0000375 ... Q12874 37165190
    23 8ch6:J (5.9) BS03 ZN ? GO:0000375 ... Q12874 37165190
    24 8ch6:N (5.9) BS01 rna 3.6.4.13 GO:0000398 ... O60231 37165190
    25 8ch6:O (5.9) BS01 rna ? GO:0000398 ... O43660 37165190
    26 8ch6:P (5.9) BS01 rna ? GO:0000077 ... Q99459 37165190
    27 8ch6:P (5.9) BS02 rna ? GO:0000077 ... Q99459 37165190
    28 8ch6:Q (5.9) BS01 rna ? GO:0000398 ... Q9P013 37165190
    29 8ch6:Q (5.9) BS02 rna ? GO:0000398 ... Q9P013 37165190
    30 8ch6:T (5.9) BS01 rna ? GO:0000398 ... P41223 37165190
    31 8ch6:T (5.9) BS02 ZN ? GO:0000398 ... P41223 37165190
    32 8ch6:T (5.9) BS03 ZN ? GO:0000398 ... P41223 37165190
    33 8ch6:T (5.9) BS04 ZN ? GO:0000398 ... P41223 37165190
    34 8ch6:U (5.9) BS01 rna ? GO:0000398 ... Q9NW64 37165190
    35 8ch6:U (5.9) BS02 rna ? GO:0000398 ... Q9NW64 37165190
    36 8ch6:U (5.9) BS03 ZN ? GO:0000398 ... Q9NW64 37165190
    37 8ch6:U (5.9) BS04 ZN ? GO:0000398 ... Q9NW64 37165190
    38 8ch6:U (5.9) BS05 ZN ? GO:0000398 ... Q9NW64 37165190
    39 8ch6:V (5.9) BS01 rna 5.2.1.8 GO:0000413 ... Q8WUA2 37165190
    40 8ch6:W (5.9) BS01 peptide ? GO:0000398 ... Q9HCG8 37165190
    41 8ch6:X (5.9) BS01 rna ? GO:0000245 ... Q9BZJ0 37165190
    42 8ch6:Y (5.9) BS01 rna ? GO:0000122 ... Q13573 37165190
    43 8ch6:Y (5.9) BS02 rna ? GO:0000122 ... Q13573 37165190
    44 8ch6:Z (5.9) BS01 rna 2.3.2.27 GO:0000398 ... O15541 37165190
    45 8ch6:Z (5.9) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 37165190
    46 8ch6:a (5.9) BS01 rna ? GO:0000244 ... Q6P2Q9 37165190
    47 8ch6:a (5.9) BS02 rna ? GO:0000244 ... Q6P2Q9 37165190
    48 8ch6:a (5.9) BS03 rna ? GO:0000244 ... Q6P2Q9 37165190
    49 8ch6:a (5.9) BS04 rna ? GO:0000244 ... Q6P2Q9 37165190
    50 8ch6:a (5.9) BS05 IHP ? GO:0000244 ... Q6P2Q9 37165190
    51 8ch6:b (5.9) BS01 GTP ? GO:0000398 ... Q15029 37165190
    52 8ch6:h (5.9) BS01 rna ? GO:0000387 ... P62306 37165190
    53 8ch6:i (5.9) BS01 rna ? GO:0000245 ... P62304 37165190
    54 8ch6:j (5.9) BS01 rna ? GO:0000243 ... P62318 37165190
    55 8ch6:k (5.9) BS01 rna ? GO:0000243 ... P62314 37165190
    56 8ch6:l (5.9) BS01 rna ? GO:0000245 ... P62316 37165190
    57 8ch6:m (5.9) BS01 rna ? GO:0000245 ... P62308 37165190
    58 8ch6:n (5.9) BS01 rna ? GO:0000387 ... P14678 37165190
    59 8ch6:q (5.9) BS01 rna ? GO:0000398 ... Q9UQ35 37165190
    60 8ch6:q (5.9) BS02 rna ? GO:0000398 ... Q9UQ35 37165190
    61 8ch6:s (5.9) BS01 rna ? GO:0000398 ... P08579 37165190
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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