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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8cbk:A (2.76) BS01 NAD 1.1.1.159
    1.1.1.178
    1.1.1.239
    1.1.1.35
    1.1.1.53
    1.1.1.62    		 GO:0000049 ... Q99714 38824131
    2 8cbk:B (2.76) BS01 NAD 1.1.1.159
    1.1.1.178
    1.1.1.239
    1.1.1.35
    1.1.1.53
    1.1.1.62    		 GO:0000049 ... Q99714 38824131
    3 8cbk:C (2.76) BS01 rna 1.1.1.159
    1.1.1.178
    1.1.1.239
    1.1.1.35
    1.1.1.53
    1.1.1.62    		 GO:0000049 ... Q99714 38824131
    4 8cbk:C (2.76) BS02 NAD 1.1.1.159
    1.1.1.178
    1.1.1.239
    1.1.1.35
    1.1.1.53
    1.1.1.62    		 GO:0000049 ... Q99714 38824131
    5 8cbk:D (2.76) BS01 NAD 1.1.1.159
    1.1.1.178
    1.1.1.239
    1.1.1.35
    1.1.1.53
    1.1.1.62    		 GO:0000049 ... Q99714 38824131
    6 8cbk:E (2.76) BS01 rna 3.1.26.5 GO:0001682 ... O15091 38824131
    7 8cbk:E (2.76) BS02 ZN 3.1.26.5 GO:0001682 ... O15091 38824131
    8 8cbk:F (2.76) BS01 rna 2.1.1.-
    2.1.1.218
    2.1.1.221    		 GO:0000049 ... Q7L0Y3 38824131
    9 8cbk:F (2.76) BS02 SAH 2.1.1.-
    2.1.1.218
    2.1.1.221    		 GO:0000049 ... Q7L0Y3 38824131
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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