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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bgh:A (2.88) BS01 rna ? GO:0000027 ... P60422 37553384
    2 8bgh:B (2.88) BS01 rna ? GO:0000027 ... P60438 37553384
    3 8bgh:C (2.88) BS01 rna ? GO:0001070 ... P60723 37553384
    4 8bgh:D (2.88) BS01 rna ? GO:0000027 ... P62399 37553384
    5 8bgh:D (2.88) BS02 rna ? GO:0000027 ... P62399 37553384
    6 8bgh:D (2.88) BS03 rna ? GO:0000027 ... P62399 37553384
    7 8bgh:E (2.88) BS01 rna ? GO:0000027 ... P0AG55 37553384
    8 8bgh:F (2.88) BS01 rna ? GO:0002181 ... P0A7R1 37553384
    9 8bgh:G (2.88) BS01 rna ? GO:0002181 ... P0AA10 37553384
    10 8bgh:H (2.88) BS01 rna ? GO:0002181 ... P0ADY3 37553384
    11 8bgh:H (2.88) BS02 rna ? GO:0002181 ... P0ADY3 37553384
    12 8bgh:I (2.88) BS01 rna ? GO:0002181 ... P02413 37553384
    13 8bgh:J (2.88) BS01 rna ? GO:0000027 ... P0ADY7 37553384
    14 8bgh:K (2.88) BS01 rna ? GO:0000027 ... P0AG44 37553384
    15 8bgh:L (2.88) BS01 rna ? GO:0002181 ... P0C018 37553384
    16 8bgh:L (2.88) BS02 rna ? GO:0002181 ... P0C018 37553384
    17 8bgh:M (2.88) BS01 rna ? GO:0000027 ... P0A7K6 37553384
    18 8bgh:M (2.88) BS02 rna ? GO:0000027 ... P0A7K6 37553384
    19 8bgh:N (2.88) BS01 rna ? GO:0000027 ... P0A7L3 37553384
    20 8bgh:O (2.88) BS01 rna ? GO:0002181 ... P0AG48 37553384
    21 8bgh:P (2.88) BS01 rna ? GO:0002181 ... P61175 37553384
    22 8bgh:Q (2.88) BS01 rna ? GO:0000027 ... P0ADZ0 37553384
    23 8bgh:R (2.88) BS01 rna ? GO:0000027 ... P60624 37553384
    24 8bgh:S (2.88) BS01 rna ? GO:0000027 ... P68919 37553384
    25 8bgh:T (2.88) BS01 rna ? GO:0000027 ... P0A7L8 37553384
    26 8bgh:U (2.88) BS01 rna ? GO:0000027 ... P0A7M2 37553384
    27 8bgh:V (2.88) BS01 rna ? GO:0000027 ... P0A7M6 37553384
    28 8bgh:W (2.88) BS01 rna ? GO:0000027 ... P0AG51 37553384
    29 8bgh:X (2.88) BS01 rna ? GO:0002181 ... P0A7M9 37553384
    30 8bgh:a (2.88) BS01 rna ? GO:0000027 ... P0A7N4 37553384
    31 8bgh:b (2.88) BS01 rna ? GO:0000027 ... P0A7N9 37553384
    32 8bgh:c (2.88) BS01 rna ? GO:0002181 ... P0A7P5 37553384
    33 8bgh:d (2.88) BS01 rna ? GO:0002181 ... P0A7Q1 37553384
    34 8bgh:e (2.88) BS01 rna ? GO:0002181 ... P0A7Q6 37553384
    35 8bgh:f (2.88) BS01 rna ? GO:0000028 ... P0A7V0 37553384
    36 8bgh:g (2.88) BS01 rna ? GO:0000028 ... P0A7V3 37553384
    37 8bgh:h (2.88) BS01 rna ? GO:0000028 ... P0A7V8 37553384
    38 8bgh:i (2.88) BS01 rna ? GO:0000028 ... P0A7W1 37553384
    39 8bgh:j (2.88) BS01 rna ? GO:0002181 ... P02358 37553384
    40 8bgh:k (2.88) BS01 rna ? GO:0000028 ... P02359 37553384
    41 8bgh:l (2.88) BS01 rna ? GO:0000028 ... P0A7W7 37553384
    42 8bgh:m (2.88) BS01 rna ? GO:0000049 ... P0A7X3 37553384
    43 8bgh:n (2.88) BS01 rna ? GO:0000049 ... P0A7R5 37553384
    44 8bgh:o (2.88) BS01 rna ? GO:0002181 ... P0A7R9 37553384
    45 8bgh:p (2.88) BS01 rna ? GO:0000049 ... P0A7S3 37553384
    46 8bgh:q (2.88) BS01 rna ? GO:0000049 ... P0A7S9 37553384
    47 8bgh:r (2.88) BS01 rna ? GO:0000028 ... P0AG59 37553384
    48 8bgh:s (2.88) BS01 rna ? GO:0000028 ... P0ADZ4 37553384
    49 8bgh:s (2.88) BS02 rna ? GO:0000028 ... P0ADZ4 37553384
    50 8bgh:t (2.88) BS01 rna ? GO:0000028 ... P0A7T3 37553384
    51 8bgh:u (2.88) BS01 rna ? GO:0000028 ... P0AG63 37553384
    52 8bgh:v (2.88) BS01 rna ? GO:0002181 ... P0A7T7 37553384
    53 8bgh:w (2.88) BS01 rna ? GO:0000028 ... P0A7U3 37553384
    54 8bgh:x (2.88) BS01 rna ? GO:0000028 ... P0A7U7 37553384
    55 8bgh:y (2.88) BS01 rna ? GO:0000028 ... P68679 37553384
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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