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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8bef:A (2.13) BS01 Q7G 7.1.1.2 GO:0005739 ... P92533 36585502
    2 8bef:H (2.13) BS01 UQ9 7.1.1.2 GO:0003954 ... P92558 36585502
    3 8bef:H (2.13) BS02 Q7G 7.1.1.2 GO:0003954 ... P92558 36585502
    4 8bef:H (2.13) BS03 Q7G 7.1.1.2 GO:0003954 ... P92558 36585502
    5 8bef:J (2.13) BS01 Q7G 7.1.1.2 GO:0005739 ... P60497 36585502
    6 8bef:L (2.13) BS01 UQ5 7.1.1.2 GO:0003954 ... P29388 36585502
    7 8bef:M (2.13) BS01 Q7G 7.1.1.2 GO:0003954 ... P93313 36585502
    8 8bef:N (2.13) BS01 Q7G 7.1.1.2 GO:0005739 ... O05000 36585502
    9 8bef:N (2.13) BS02 UQ5 7.1.1.2 GO:0005739 ... O05000 36585502
    10 8bef:O (2.13) BS01 FE ? GO:0005515 ... Q9SRR8 36585502
    11 8bef:X (2.13) BS01 Q7G ? GO:0005739 ... Q8LGE7 36585502
    12 8bef:Z (2.13) BS01 Q7G ? GO:0005576 ... Q8RWA7 36585502
    13 8bef:f (2.13) BS01 peptide ? GO:0005739 ... Q84W12 36585502
    14 8bef:x (2.13) BS01 BCO ? GO:0000325 ... Q9SMN1 36585502
    15 8bef:y (2.13) BS01 peptide 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    16 8bef:y (2.13) BS02 ZN 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    17 8bef:y (2.13) BS03 BCO 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    18 8bef:z (2.13) BS01 peptide 4.2.1.- GO:0004089 ... Q9FWR5 36585502
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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