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BioLiP
Download all results in tab-seperated text for 49 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8b7z:A (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    2 8b7z:A (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    3 8b7z:B (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    4 8b7z:B (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    5 8b7z:B (3.0) BS03 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    6 8b7z:C (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    7 8b7z:C (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    8 8b7z:D (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    9 8b7z:D (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    10 8b7z:E (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    11 8b7z:E (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    12 8b7z:F (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    13 8b7z:F (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    14 8b7z:G (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    15 8b7z:G (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    16 8b7z:H (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    17 8b7z:H (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    18 8b7z:I (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    19 8b7z:I (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    20 8b7z:I (3.0) BS03 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    21 8b7z:J (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    22 8b7z:K (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    23 8b7z:K (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    24 8b7z:L (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    25 8b7z:L (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    26 8b7z:M (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    27 8b7z:M (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    28 8b7z:M (3.0) BS03 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    29 8b7z:M (3.0) BS04 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    30 8b7z:M (3.0) BS05 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    31 8b7z:N (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    32 8b7z:N (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    33 8b7z:N (3.0) BS03 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    34 8b7z:N (3.0) BS04 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    35 8b7z:N (3.0) BS05 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    36 8b7z:O (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    37 8b7z:O (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    38 8b7z:O (3.0) BS03 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    39 8b7z:O (3.0) BS04 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    40 8b7z:O (3.0) BS05 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    41 8b7z:P (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    42 8b7z:P (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    43 8b7z:P (3.0) BS03 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    44 8b7z:P (3.0) BS04 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    45 8b7z:P (3.0) BS05 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    46 8b7z:Q (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    47 8b7z:Q (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    48 8b7z:R (3.0) BS01 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    49 8b7z:R (3.0) BS02 DQH 5.5.1.6 GO:0016853 ... V9P0A9 36432010
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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