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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8a57:1 (2.3) BS01 rna ? GO:0003735 ... P66144 36300626
    2 8a57:2 (2.3) BS01 rna ? GO:0003735 ... P66166 36300626
    3 8a57:3 (2.3) BS01 rna ? GO:0003735 ... Q927M5 36300626
    4 8a57:3 (2.3) BS02 rna ? GO:0003735 ... Q927M5 36300626
    5 8a57:4 (2.3) BS01 rna ? GO:0003735 ... P0A485 36300626
    6 8a57:5 (2.3) BS01 rna ? GO:0003735 ... P66207 36300626
    7 8a57:5 (2.3) BS02 ZN ? GO:0003735 ... P66207 36300626
    8 8a57:6 (2.3) BS01 rna ? GO:0003735 ... P66219 36300626
    9 8a57:7 (2.3) BS01 rna ? GO:0003735 ... P66248 36300626
    10 8a57:8 (2.3) BS01 rna ? GO:0003735 ... P0A491 36300626
    11 8a57:9 (2.3) BS01 rna ? GO:0003735 ... P66290 36300626
    12 8a57:9 (2.3) BS02 ZN ? GO:0003735 ... P66290 36300626
    13 8a57:D (2.3) BS01 rna ? GO:0003924 ... Q8Y8Y0 36300626
    14 8a57:D (2.3) BS02 GNP ? GO:0003924 ... Q8Y8Y0 36300626
    15 8a57:D (2.3) BS03 MG ? GO:0003924 ... Q8Y8Y0 36300626
    16 8a57:E (2.3) BS01 rna ? GO:0003735 ... P66054 36300626
    17 8a57:G (2.3) BS01 rna ? GO:0002181 ... P60426 36300626
    18 8a57:H (2.3) BS01 rna ? GO:0003735 ... Q8Y440 36300626
    19 8a57:I (2.3) BS01 rna ? GO:0003735 ... P61055 36300626
    20 8a57:J (2.3) BS01 rna ? GO:0000049 ... Q927L9 36300626
    21 8a57:J (2.3) BS02 rna ? GO:0000049 ... Q927L9 36300626
    22 8a57:K (2.3) BS01 rna ? GO:0002181 ... Q8Y444 36300626
    23 8a57:M (2.3) BS01 rna ? GO:0003729 ... Q8Y458 36300626
    24 8a57:N (2.3) BS01 rna ? GO:0003735 ... Q927L7 36300626
    25 8a57:O (2.3) BS01 rna ? GO:0003735 ... Q8Y447 36300626
    26 8a57:P (2.3) BS01 rna ? GO:0000049 ... Q927L4 36300626
    27 8a57:P (2.3) BS02 rna ? GO:0000049 ... Q927L4 36300626
    28 8a57:Q (2.3) BS01 rna ? GO:0003735 ... Q8Y450 36300626
    29 8a57:R (2.3) BS01 rna ? GO:0003735 ... Q8Y445 36300626
    30 8a57:R (2.3) BS02 rna ? GO:0003735 ... Q8Y445 36300626
    31 8a57:S (2.3) BS01 rna ? GO:0003735 ... O53083 36300626
    32 8a57:T (2.3) BS01 rna ? GO:0000027 ... P66103 36300626
    33 8a57:U (2.3) BS01 rna ? GO:0003723 ... Q8Y6Y9 36300626
    34 8a57:V (2.3) BS01 rna ? GO:0003735 ... Q927L2 36300626
    35 8a57:W (2.3) BS01 rna ? GO:0000027 ... Q8Y441 36300626
    36 8a57:X (2.3) BS01 rna ? GO:0003723 ... Q8Y443 36300626
    37 8a57:Z (2.3) BS01 rna ? GO:0003735 ... P66125 36300626
    38 8a57:Z (2.3) BS02 rna ? GO:0003735 ... P66125 36300626
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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