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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zsa:0 (4.0) BS01 SF4 3.6.4.12 GO:0000019 ... P06839 36411341
    2 7zsa:3 (4.0) BS01 ZN ? GO:0000993 ... Q03290 36411341
    3 7zsa:3 (4.0) BS02 ZN ? GO:0000993 ... Q03290 36411341
    4 7zsa:4 (4.0) BS01 ZN ? GO:0000112 ... Q12004 36411341
    5 7zsa:6 (4.0) BS01 dna ? GO:0000112 ... Q04673 36411341
    6 7zsa:6 (4.0) BS02 ZN ? GO:0000112 ... Q04673 36411341
    7 7zsa:6 (4.0) BS03 ZN ? GO:0000112 ... Q04673 36411341
    8 7zsa:6 (4.0) BS04 ZN ? GO:0000112 ... Q04673 36411341
    9 7zsa:6 (4.0) BS05 ZN ? GO:0000112 ... Q04673 36411341
    10 7zsa:7 (4.0) BS01 dna 5.6.2.4 GO:0000019 ... Q00578 36411341
    11 7zsa:7 (4.0) BS02 dna 5.6.2.4 GO:0000019 ... Q00578 36411341
    12 7zsa:A (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 36411341
    13 7zsa:A (4.0) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 36411341
    14 7zsa:A (4.0) BS03 MG 2.7.7.6 GO:0000428 ... P04050 36411341
    15 7zsa:B (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 36411341
    16 7zsa:C (4.0) BS01 ZN ? GO:0000428 ... P16370 36411341
    17 7zsa:I (4.0) BS01 ZN ? GO:0000428 ... P27999 36411341
    18 7zsa:I (4.0) BS02 ZN ? GO:0000428 ... P27999 36411341
    19 7zsa:J (4.0) BS01 ZN ? GO:0000428 ... P22139 36411341
    20 7zsa:L (4.0) BS01 ZN ? GO:0000428 ... P40422 36411341
    21 7zsa:M (4.0) BS01 dna ? GO:0000993 ... P29055 36411341
    22 7zsa:M (4.0) BS02 ZN ? GO:0000993 ... P29055 36411341
    23 7zsa:O (4.0) BS01 dna ? GO:0000126 ... P13393 36411341
    24 7zsa:O (4.0) BS02 dna ? GO:0000126 ... P13393 36411341
    25 7zsa:R (4.0) BS01 dna ? GO:0000166 ... P41896 36411341
    26 7zsa:R (4.0) BS02 dna ? GO:0000166 ... P41896 36411341
    27 7zsa:U (4.0) BS01 dna ? GO:0005672 ... P32773 36411341
    28 7zsa:U (4.0) BS02 dna ? GO:0005672 ... P32773 36411341
    29 7zsa:W (4.0) BS01 dna ? GO:0000993 ... P36100 36411341
    30 7zsa:W (4.0) BS02 dna ? GO:0000993 ... P36100 36411341
    31 7zsa:W (4.0) BS03 ZN ? GO:0000993 ... P36100 36411341
    32 7zsa:a (4.0) BS01 dna ? GO:0000786 ... P84233 36411341
    33 7zsa:a (4.0) BS02 dna ? GO:0000786 ... P84233 36411341
    34 7zsa:b (4.0) BS01 dna ? GO:0000786 ... P62799 36411341
    35 7zsa:b (4.0) BS02 dna ? GO:0000786 ... P62799 36411341
    36 7zsa:c (4.0) BS01 dna ? GO:0000786 ... P06897 36411341
    37 7zsa:c (4.0) BS02 dna ? GO:0000786 ... P06897 36411341
    38 7zsa:d (4.0) BS01 dna ? GO:0000786 ... P02281 36411341
    39 7zsa:d (4.0) BS02 dna ? GO:0000786 ... P02281 36411341
    40 7zsa:e (4.0) BS01 dna ? GO:0000786 ... P84233 36411341
    41 7zsa:e (4.0) BS02 dna ? GO:0000786 ... P84233 36411341
    42 7zsa:f (4.0) BS01 dna ? GO:0000786 ... P62799 36411341
    43 7zsa:f (4.0) BS02 dna ? GO:0000786 ... P62799 36411341
    44 7zsa:g (4.0) BS01 dna ? GO:0000786 ... P06897 36411341
    45 7zsa:g (4.0) BS02 dna ? GO:0000786 ... P06897 36411341
    46 7zsa:h (4.0) BS01 dna ? GO:0000786 ... P02281 36411341
    47 7zsa:h (4.0) BS02 dna ? GO:0000786 ... P02281 36411341
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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