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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zme:2 (2.83) BS01 LMN 7.1.1.2 GO:0005739 ... G1DJ98 36427319
    2 7zme:4 (2.83) BS01 LMN 7.1.1.2 GO:0003954 ... G1DJA7 36427319
    3 7zme:5 (2.83) BS01 LMN 7.1.1.2 GO:0008137 ... G1DJA3 36427319
    4 7zme:J (2.83) BS01 LMN ? GO:0005739 ... G0S2B3 36427319
    5 7zme:Q (2.83) BS01 ZMP ? GO:0000035 ... G0SBG9 36427319
    6 7zme:R (2.83) BS01 ZMP ? GO:0005739 ... G0SAY0 36427319
    7 7zme:j (2.83) BS01 LMN ? GO:0016020 ... G0S5C8 36427319
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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