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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7zag:0 (2.77) BS01 rna ? GO:0005840 ... Q8U232 35694843
    2 7zag:3 (2.77) BS01 rna ? GO:0001682 ... P62008 35694843
    3 7zag:6 (2.77) BS01 rna ? GO:0003723 ... Q9V138 35694843
    4 7zag:7 (2.77) BS01 rna ? GO:0003743 ... Q9UZK7 35694843
    5 7zag:7 (2.77) BS02 MET ? GO:0003743 ... Q9UZK7 35694843
    6 7zag:A (2.77) BS01 rna ? GO:0003735 ... Q9V2K7 35694843
    7 7zag:B (2.77) BS01 rna ? GO:0000028 ... Q9V191 35694843
    8 7zag:C (2.77) BS01 ZN ? N/A G8ZFK7 35694843
    9 7zag:C (2.77) BS02 ZN ? N/A G8ZFK7 35694843
    10 7zag:D (2.77) BS01 rna ? GO:0003723 ... P61992 35694843
    11 7zag:E (2.77) BS01 rna ? GO:0003723 ... Q9V1U8 35694843
    12 7zag:F (2.77) BS01 rna ? GO:0003723 ... Q9V1V5 35694843
    13 7zag:F (2.77) BS02 ZN ? GO:0003723 ... Q9V1V5 35694843
    14 7zag:G (2.77) BS01 rna ? GO:0003735 ... Q9UYS3 35694843
    15 7zag:H (2.77) BS01 rna ? GO:0000028 ... Q9V109 35694843
    16 7zag:H (2.77) BS02 rna ? GO:0000028 ... Q9V109 35694843
    17 7zag:I (2.77) BS01 rna ? GO:0003735 ... Q9V1V0 35694843
    18 7zag:J (2.77) BS01 rna ? GO:0000462 ... Q9UZL4 35694843
    19 7zag:K (2.77) BS01 rna ? GO:0000462 ... Q9V195 35694843
    20 7zag:L (2.77) BS01 rna ? GO:0000049 ... Q9V0V6 35694843
    21 7zag:M (2.77) BS01 rna ? GO:0003735 ... P62010 35694843
    22 7zag:N (2.77) BS01 rna ? GO:0003735 ... P61994 35694843
    23 7zag:O (2.77) BS01 rna ? GO:0003676 ... Q9V1A0 35694843
    24 7zag:P (2.77) BS01 rna ? GO:0003723 ... P62012 35694843
    25 7zag:P (2.77) BS02 ZN ? GO:0003723 ... P62012 35694843
    26 7zag:Q (2.77) BS01 rna ? GO:0003735 ... Q9V2K9 35694843
    27 7zag:R (2.77) BS01 rna ? GO:0003735 ... Q9V1U5 35694843
    28 7zag:R (2.77) BS02 ZN ? GO:0003735 ... Q9V1U5 35694843
    29 7zag:S (2.77) BS01 rna ? GO:0003735 ... Q9V0G0 35694843
    30 7zag:T (2.77) BS01 rna ? GO:0000028 ... Q9V1T9 35694843
    31 7zag:U (2.77) BS01 rna ? GO:0000028 ... Q9V0G8 35694843
    32 7zag:V (2.77) BS01 rna ? GO:0003735 ... Q9UY20 35694843
    33 7zag:W (2.77) BS01 rna ? GO:0000028 ... Q9UXZ3 35694843
    34 7zag:W (2.77) BS02 ZN ? GO:0000028 ... Q9UXZ3 35694843
    35 7zag:X (2.77) BS01 rna ? GO:0000028 ... P61029 35694843
    36 7zag:Y (2.77) BS01 rna ? GO:0003735 ... P61238 35694843
    37 7zag:Z (2.77) BS01 rna ? GO:0003676 ... Q9V1U1 35694843
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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