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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 193 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7wfe:B1 (3.25) BS01 CLA ? GO:0003729 ... Q01667 35123031
    2 7wfe:B1 (3.25) BS02 CHL ? GO:0003729 ... Q01667 35123031
    3 7wfe:B1 (3.25) BS03 CLA ? GO:0003729 ... Q01667 35123031
    4 7wfe:B1 (3.25) BS04 CLA ? GO:0003729 ... Q01667 35123031
    5 7wfe:B1 (3.25) BS05 CLA ? GO:0003729 ... Q01667 35123031
    6 7wfe:B1 (3.25) BS06 CLA ? GO:0003729 ... Q01667 35123031
    7 7wfe:B1 (3.25) BS07 CLA ? GO:0003729 ... Q01667 35123031
    8 7wfe:B1 (3.25) BS08 CLA ? GO:0003729 ... Q01667 35123031
    9 7wfe:B1 (3.25) BS09 CLA ? GO:0003729 ... Q01667 35123031
    10 7wfe:B1 (3.25) BS10 CLA ? GO:0003729 ... Q01667 35123031
    11 7wfe:B1 (3.25) BS11 CLA ? GO:0003729 ... Q01667 35123031
    12 7wfe:B2 (3.25) BS01 CLA ? GO:0005515 ... Q9SYW8 35123031
    13 7wfe:B2 (3.25) BS02 CLA ? GO:0005515 ... Q9SYW8 35123031
    14 7wfe:B2 (3.25) BS03 CLA ? GO:0005515 ... Q9SYW8 35123031
    15 7wfe:B2 (3.25) BS04 CHL ? GO:0005515 ... Q9SYW8 35123031
    16 7wfe:B2 (3.25) BS05 CHL ? GO:0005515 ... Q9SYW8 35123031
    17 7wfe:B2 (3.25) BS06 CHL ? GO:0005515 ... Q9SYW8 35123031
    18 7wfe:B2 (3.25) BS07 CLA ? GO:0005515 ... Q9SYW8 35123031
    19 7wfe:B2 (3.25) BS08 CLA ? GO:0005515 ... Q9SYW8 35123031
    20 7wfe:B2 (3.25) BS09 CLA ? GO:0005515 ... Q9SYW8 35123031
    21 7wfe:B2 (3.25) BS10 CLA ? GO:0005515 ... Q9SYW8 35123031
    22 7wfe:B2 (3.25) BS11 CLA ? GO:0005515 ... Q9SYW8 35123031
    23 7wfe:B2 (3.25) BS12 CHL ? GO:0005515 ... Q9SYW8 35123031
    24 7wfe:B2 (3.25) BS13 CHL ? GO:0005515 ... Q9SYW8 35123031
    25 7wfe:B2 (3.25) BS14 CLA ? GO:0005515 ... Q9SYW8 35123031
    26 7wfe:B3 (3.25) BS01 CLA ? GO:0003729 ... Q9SY97 35123031
    27 7wfe:B3 (3.25) BS02 CLA ? GO:0003729 ... Q9SY97 35123031
    28 7wfe:B3 (3.25) BS03 CLA ? GO:0003729 ... Q9SY97 35123031
    29 7wfe:B3 (3.25) BS04 CHL ? GO:0003729 ... Q9SY97 35123031
    30 7wfe:B3 (3.25) BS05 CLA ? GO:0003729 ... Q9SY97 35123031
    31 7wfe:B3 (3.25) BS06 CLA ? GO:0003729 ... Q9SY97 35123031
    32 7wfe:B3 (3.25) BS07 CLA ? GO:0003729 ... Q9SY97 35123031
    33 7wfe:B3 (3.25) BS08 CLA ? GO:0003729 ... Q9SY97 35123031
    34 7wfe:B3 (3.25) BS09 CLA ? GO:0003729 ... Q9SY97 35123031
    35 7wfe:B3 (3.25) BS10 CHL ? GO:0003729 ... Q9SY97 35123031
    36 7wfe:B3 (3.25) BS11 CLA ? GO:0003729 ... Q9SY97 35123031
    37 7wfe:B3 (3.25) BS12 CLA ? GO:0003729 ... Q9SY97 35123031
    38 7wfe:B3 (3.25) BS13 CLA ? GO:0003729 ... Q9SY97 35123031
    39 7wfe:B3 (3.25) BS14 CLA ? GO:0003729 ... Q9SY97 35123031
    40 7wfe:B3 (3.25) BS15 CLA ? GO:0003729 ... Q9SY97 35123031
    41 7wfe:B3 (3.25) BS16 CLA ? GO:0003729 ... Q9SY97 35123031
    42 7wfe:B3 (3.25) BS17 CLA ? GO:0003729 ... Q9SY97 35123031
    43 7wfe:B3 (3.25) BS18 CLA ? GO:0003729 ... Q9SY97 35123031
    44 7wfe:B5 (3.25) BS01 CHL ? GO:0005515 ... Q9C639 35123031
    45 7wfe:B5 (3.25) BS02 CLA ? GO:0005515 ... Q9C639 35123031
    46 7wfe:B5 (3.25) BS03 CLA ? GO:0005515 ... Q9C639 35123031
    47 7wfe:B5 (3.25) BS04 CLA ? GO:0005515 ... Q9C639 35123031
    48 7wfe:B5 (3.25) BS05 CLA ? GO:0005515 ... Q9C639 35123031
    49 7wfe:B5 (3.25) BS06 CHL ? GO:0005515 ... Q9C639 35123031
    50 7wfe:B5 (3.25) BS07 CHL ? GO:0005515 ... Q9C639 35123031
    51 7wfe:B5 (3.25) BS08 CHL ? GO:0005515 ... Q9C639 35123031
    52 7wfe:B5 (3.25) BS09 CLA ? GO:0005515 ... Q9C639 35123031
    53 7wfe:B5 (3.25) BS10 CLA ? GO:0005515 ... Q9C639 35123031
    54 7wfe:B5 (3.25) BS11 CLA ? GO:0005515 ... Q9C639 35123031
    55 7wfe:B5 (3.25) BS12 CLA ? GO:0005515 ... Q9C639 35123031
    56 7wfe:B5 (3.25) BS13 CLA ? GO:0005515 ... Q9C639 35123031
    57 7wfe:B5 (3.25) BS14 CLA ? GO:0005515 ... Q9C639 35123031
    58 7wfe:BA (3.25) BS01 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    59 7wfe:BA (3.25) BS02 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    60 7wfe:BA (3.25) BS03 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    61 7wfe:BA (3.25) BS04 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    62 7wfe:BA (3.25) BS05 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    63 7wfe:BA (3.25) BS06 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    64 7wfe:BA (3.25) BS07 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    65 7wfe:BA (3.25) BS08 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    66 7wfe:BA (3.25) BS09 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    67 7wfe:BA (3.25) BS10 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    68 7wfe:BA (3.25) BS11 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    69 7wfe:BA (3.25) BS12 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    70 7wfe:BA (3.25) BS13 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    71 7wfe:BA (3.25) BS14 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    72 7wfe:BA (3.25) BS15 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    73 7wfe:BA (3.25) BS16 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    74 7wfe:BA (3.25) BS17 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    75 7wfe:BA (3.25) BS18 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    76 7wfe:BA (3.25) BS19 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    77 7wfe:BA (3.25) BS20 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    78 7wfe:BA (3.25) BS21 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    79 7wfe:BA (3.25) BS22 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    80 7wfe:BA (3.25) BS23 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    81 7wfe:BA (3.25) BS24 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    82 7wfe:BA (3.25) BS25 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    83 7wfe:BA (3.25) BS26 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    84 7wfe:BA (3.25) BS27 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    85 7wfe:BA (3.25) BS28 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    86 7wfe:BA (3.25) BS29 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    87 7wfe:BA (3.25) BS30 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    88 7wfe:BA (3.25) BS31 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    89 7wfe:BA (3.25) BS32 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    90 7wfe:BA (3.25) BS33 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    91 7wfe:BA (3.25) BS34 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    92 7wfe:BA (3.25) BS35 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    93 7wfe:BA (3.25) BS36 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    94 7wfe:BA (3.25) BS37 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    95 7wfe:BA (3.25) BS38 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    96 7wfe:BA (3.25) BS39 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    97 7wfe:BA (3.25) BS40 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    98 7wfe:BA (3.25) BS41 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    99 7wfe:BA (3.25) BS42 PQN 1.97.1.12 GO:0000287 ... P56766 35123031
    100 7wfe:BA (3.25) BS43 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    101 7wfe:BA (3.25) BS44 SF4 1.97.1.12 GO:0000287 ... P56766 35123031
    102 7wfe:BA (3.25) BS45 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    103 7wfe:BA (3.25) BS46 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    104 7wfe:BA (3.25) BS47 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    105 7wfe:BA (3.25) BS48 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    106 7wfe:BA (3.25) BS49 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    107 7wfe:BA (3.25) BS50 CLA 1.97.1.12 GO:0000287 ... P56766 35123031
    108 7wfe:BB (3.25) BS01 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    109 7wfe:BB (3.25) BS02 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    110 7wfe:BB (3.25) BS03 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    111 7wfe:BB (3.25) BS04 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    112 7wfe:BB (3.25) BS05 SF4 1.97.1.12 GO:0000287 ... P56767 35123031
    113 7wfe:BB (3.25) BS06 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    114 7wfe:BB (3.25) BS07 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    115 7wfe:BB (3.25) BS08 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    116 7wfe:BB (3.25) BS09 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    117 7wfe:BB (3.25) BS10 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    118 7wfe:BB (3.25) BS11 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    119 7wfe:BB (3.25) BS12 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    120 7wfe:BB (3.25) BS13 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    121 7wfe:BB (3.25) BS14 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    122 7wfe:BB (3.25) BS15 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    123 7wfe:BB (3.25) BS16 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    124 7wfe:BB (3.25) BS17 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    125 7wfe:BB (3.25) BS18 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    126 7wfe:BB (3.25) BS19 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    127 7wfe:BB (3.25) BS20 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    128 7wfe:BB (3.25) BS21 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    129 7wfe:BB (3.25) BS22 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    130 7wfe:BB (3.25) BS23 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    131 7wfe:BB (3.25) BS24 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    132 7wfe:BB (3.25) BS25 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    133 7wfe:BB (3.25) BS26 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    134 7wfe:BB (3.25) BS27 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    135 7wfe:BB (3.25) BS28 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    136 7wfe:BB (3.25) BS29 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    137 7wfe:BB (3.25) BS30 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    138 7wfe:BB (3.25) BS31 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    139 7wfe:BB (3.25) BS32 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    140 7wfe:BB (3.25) BS33 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    141 7wfe:BB (3.25) BS34 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    142 7wfe:BB (3.25) BS35 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    143 7wfe:BB (3.25) BS36 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    144 7wfe:BB (3.25) BS37 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    145 7wfe:BB (3.25) BS38 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    146 7wfe:BB (3.25) BS39 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    147 7wfe:BB (3.25) BS40 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    148 7wfe:BB (3.25) BS41 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    149 7wfe:BB (3.25) BS42 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    150 7wfe:BB (3.25) BS43 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    151 7wfe:BB (3.25) BS44 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    152 7wfe:BB (3.25) BS45 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    153 7wfe:BB (3.25) BS46 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    154 7wfe:BB (3.25) BS47 PQN 1.97.1.12 GO:0000287 ... P56767 35123031
    155 7wfe:BB (3.25) BS48 CLA 1.97.1.12 GO:0000287 ... P56767 35123031
    156 7wfe:BC (3.25) BS01 SF4 1.97.1.12 GO:0003729 ... P62090 35123031
    157 7wfe:BC (3.25) BS02 SF4 1.97.1.12 GO:0003729 ... P62090 35123031
    158 7wfe:BF (3.25) BS01 CLA ? GO:0003729 ... Q9SHE8 35123031
    159 7wfe:BF (3.25) BS02 CLA ? GO:0003729 ... Q9SHE8 35123031
    160 7wfe:BF (3.25) BS03 CLA ? GO:0003729 ... Q9SHE8 35123031
    161 7wfe:BF (3.25) BS04 CLA ? GO:0003729 ... Q9SHE8 35123031
    162 7wfe:BF (3.25) BS05 CLA ? GO:0003729 ... Q9SHE8 35123031
    163 7wfe:BF (3.25) BS06 CLA ? GO:0003729 ... Q9SHE8 35123031
    164 7wfe:BF (3.25) BS07 CLA ? GO:0003729 ... Q9SHE8 35123031
    165 7wfe:BG (3.25) BS01 CLA ? GO:0005515 ... Q9S7N7 35123031
    166 7wfe:BG (3.25) BS02 CLA ? GO:0005515 ... Q9S7N7 35123031
    167 7wfe:BG (3.25) BS03 CLA ? GO:0005515 ... Q9S7N7 35123031
    168 7wfe:BG (3.25) BS04 CLA ? GO:0005515 ... Q9S7N7 35123031
    169 7wfe:BG (3.25) BS05 CLA ? GO:0005515 ... Q9S7N7 35123031
    170 7wfe:BH (3.25) BS01 CLA ? GO:0005634 ... Q9SUI6 35123031
    171 7wfe:BH (3.25) BS02 CLA ? GO:0005634 ... Q9SUI6 35123031
    172 7wfe:BI (3.25) BS01 CLA ? GO:0003674 ... P56768 35123031
    173 7wfe:BI (3.25) BS02 CLA ? GO:0003674 ... P56768 35123031
    174 7wfe:BI (3.25) BS03 CLA ? GO:0003674 ... P56768 35123031
    175 7wfe:BI (3.25) BS04 CLA ? GO:0003674 ... P56768 35123031
    176 7wfe:BI (3.25) BS05 CLA ? GO:0003674 ... P56768 35123031
    177 7wfe:BJ (3.25) BS01 CLA ? GO:0003674 ... P56769 35123031
    178 7wfe:BJ (3.25) BS02 CLA ? GO:0003674 ... P56769 35123031
    179 7wfe:BJ (3.25) BS03 CLA ? GO:0003674 ... P56769 35123031
    180 7wfe:BJ (3.25) BS04 CLA ? GO:0003674 ... P56769 35123031
    181 7wfe:BJ (3.25) BS05 CLA ? GO:0003674 ... P56769 35123031
    182 7wfe:BK (3.25) BS01 CLA ? GO:0005634 ... Q9SUI5 35123031
    183 7wfe:BK (3.25) BS02 CLA ? GO:0005634 ... Q9SUI5 35123031
    184 7wfe:BK (3.25) BS03 CLA ? GO:0005634 ... Q9SUI5 35123031
    185 7wfe:BK (3.25) BS04 CLA ? GO:0005634 ... Q9SUI5 35123031
    186 7wfe:BL (3.25) BS01 CLA ? GO:0003729 ... Q9SUI4 35123031
    187 7wfe:BL (3.25) BS02 CLA ? GO:0003729 ... Q9SUI4 35123031
    188 7wfe:BL (3.25) BS03 CLA ? GO:0003729 ... Q9SUI4 35123031
    189 7wfe:BL (3.25) BS04 CLA ? GO:0003729 ... Q9SUI4 35123031
    190 7wfe:BL (3.25) BS05 CLA ? GO:0003729 ... Q9SUI4 35123031
    191 7wfe:BL (3.25) BS06 CLA ? GO:0003729 ... Q9SUI4 35123031
    192 7wfe:BL (3.25) BS07 CLA ? GO:0003729 ... Q9SUI4 35123031
    193 7wfe:BL (3.25) BS08 CLA ? GO:0003729 ... Q9SUI4 35123031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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