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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7uvx:0 (2.35) BS01 rna ? GO:0003735 ... A0A7U4DFF9 37192172
    2 7uvx:1 (2.35) BS01 rna ? GO:0003735 ... N/A 37192172
    3 7uvx:2 (2.35) BS01 rna ? GO:0003735 ... B7I693 37192172
    4 7uvx:3 (2.35) BS01 rna ? GO:0003735 ... B7IA18 37192172
    5 7uvx:3 (2.35) BS02 ZN ? GO:0003735 ... B7IA18 37192172
    6 7uvx:C (2.35) BS01 rna ? GO:0002181 ... B7IA36 37192172
    7 7uvx:D (2.35) BS01 rna ? GO:0003735 ... B7IA39 37192172
    8 7uvx:E (2.35) BS01 rna ? GO:0003735 ... B7IA38 37192172
    9 7uvx:F (2.35) BS01 rna ? GO:0000049 ... B7IA27 37192172
    10 7uvx:F (2.35) BS02 rna ? GO:0000049 ... B7IA27 37192172
    11 7uvx:G (2.35) BS01 rna ? GO:0002181 ... B7IA24 37192172
    12 7uvx:H (2.35) BS01 rna ? GO:0003735 ... B7IBC3 37192172
    13 7uvx:I (2.35) BS01 rna ? GO:0003729 ... B7I9B0 37192172
    14 7uvx:J (2.35) BS01 rna ? GO:0003735 ... N8SHC6 37192172
    15 7uvx:J (2.35) BS02 rna ? GO:0003735 ... N8SHC6 37192172
    16 7uvx:K (2.35) BS01 rna ? GO:0003735 ... B7IA20 37192172
    17 7uvx:L (2.35) BS01 rna ? GO:0000049 ... B7IA32 37192172
    18 7uvx:L (2.35) BS02 rna ? GO:0000049 ... B7IA32 37192172
    19 7uvx:M (2.35) BS01 rna ? GO:0003735 ... B7IA13 37192172
    20 7uvx:N (2.35) BS01 rna ? GO:0003735 ... B7IA23 37192172
    21 7uvx:N (2.35) BS02 rna ? GO:0003735 ... B7IA23 37192172
    22 7uvx:O (2.35) BS01 rna ? GO:0003735 ... B7IAS9 37192172
    23 7uvx:O (2.35) BS02 rna ? GO:0003735 ... B7IAS9 37192172
    24 7uvx:P (2.35) BS01 rna ? GO:0000027 ... V5VGC9 37192172
    25 7uvx:Q (2.35) BS01 rna ? GO:0003723 ... B7I6V9 37192172
    26 7uvx:R (2.35) BS01 rna ? GO:0003735 ... A0A009I821 37192172
    27 7uvx:S (2.35) BS01 rna ? GO:0000027 ... B7IA37 37192172
    28 7uvx:T (2.35) BS01 rna ? GO:0003723 ... B7IA28 37192172
    29 7uvx:U (2.35) BS01 rna ? GO:0003723 ... B7I7B6 37192172
    30 7uvx:V (2.35) BS01 rna ? GO:0003735 ... B7I6V8 37192172
    31 7uvx:W (2.35) BS01 rna ? GO:0003735 ... N/A 37192172
    32 7uvx:W (2.35) BS02 OI9 ? GO:0003735 ... N/A 37192172
    33 7uvx:X (2.35) BS01 rna ? GO:0003735 ... B7IA31 37192172
    34 7uvx:Y (2.35) BS01 rna ? GO:0003735 ... B7IA21 37192172
    35 7uvx:Z (2.35) BS01 rna ? GO:0003735 ... B7I7A4 37192172
    36 7uvx:b (2.35) BS01 rna ? GO:0003735 ... V5VBC2 37192172
    37 7uvx:c (2.35) BS01 rna ? GO:0003676 ... V5V9N0 37192172
    38 7uvx:d (2.35) BS01 rna ? GO:0003723 ... B7IA15 37192172
    39 7uvx:e (2.35) BS01 rna ? GO:0003723 ... B7IA22 37192172
    40 7uvx:f (2.35) BS01 rna ? GO:0003735 ... B7IBC1 37192172
    41 7uvx:g (2.35) BS01 rna ? GO:0000028 ... B7I7S0 37192172
    42 7uvx:h (2.35) BS01 rna ? GO:0003735 ... B7IA25 37192172
    43 7uvx:i (2.35) BS01 rna ? GO:0003723 ... V5VBA5 37192172
    44 7uvx:j (2.35) BS01 rna N/A GO:0003723 ... N/A 37192172
    45 7uvx:k (2.35) BS01 rna ? GO:0003735 ... A0A4R0F9S8 37192172
    46 7uvx:l (2.35) BS01 rna ? GO:0000049 ... B7I7R9 37192172
    47 7uvx:m (2.35) BS01 rna ? GO:0000049 ... B7IA17 37192172
    48 7uvx:n (2.35) BS01 rna ? GO:0003735 ... B7IA26 37192172
    49 7uvx:o (2.35) BS01 rna ? GO:0003735 ... B7I3U0 37192172
    50 7uvx:o (2.35) BS02 rna ? GO:0003735 ... B7I3U0 37192172
    51 7uvx:p (2.35) BS01 rna ? GO:0003735 ... A0A1V3DIZ9 37192172
    52 7uvx:q (2.35) BS01 rna ? GO:0003735 ... B7IA30 37192172
    53 7uvx:r (2.35) BS01 rna ? GO:0003735 ... A0A372MP10 37192172
    54 7uvx:s (2.35) BS01 rna ? GO:0000028 ... B7IA35 37192172
    55 7uvx:t (2.35) BS01 rna ? GO:0003723 ... B7I5N9 37192172
    56 7uvx:u (2.35) BS01 rna ? GO:0003735 ... A0A0Q7FMS9 37192172
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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