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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7unc:A (3.0) BS01 rna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35709268
    2 7unc:A (3.0) BS02 dna 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35709268
    3 7unc:A (3.0) BS03 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35709268
    4 7unc:A (3.0) BS04 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35709268
    5 7unc:B (3.0) BS01 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 35709268
    6 7unc:B (3.0) BS02 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 35709268
    7 7unc:B (3.0) BS03 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 35709268
    8 7unc:B (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 35709268
    9 7unc:C (3.0) BS01 ZN ? GO:0003677 ... A0A481DF93 35709268
    10 7unc:I (3.0) BS01 ZN N/A GO:0003676 ... N/A 35709268
    11 7unc:I (3.0) BS02 ZN N/A GO:0003676 ... N/A 35709268
    12 7unc:J (3.0) BS01 ZN N/A GO:0003677 ... N/A 35709268
    13 7unc:a (3.0) BS01 dna ? GO:0000786 ... P84233 35709268
    14 7unc:a (3.0) BS02 dna ? GO:0000786 ... P84233 35709268
    15 7unc:b (3.0) BS01 dna ? GO:0000786 ... P62799 35709268
    16 7unc:b (3.0) BS02 dna ? GO:0000786 ... P62799 35709268
    17 7unc:c (3.0) BS01 dna ? GO:0000786 ... Q6AZJ8 35709268
    18 7unc:c (3.0) BS02 dna ? GO:0000786 ... Q6AZJ8 35709268
    19 7unc:d (3.0) BS01 dna ? GO:0000786 ... P02281 35709268
    20 7unc:d (3.0) BS02 dna ? GO:0000786 ... P02281 35709268
    21 7unc:e (3.0) BS01 dna ? GO:0000786 ... P84233 35709268
    22 7unc:e (3.0) BS02 dna ? GO:0000786 ... P84233 35709268
    23 7unc:f (3.0) BS01 dna ? GO:0000786 ... P62799 35709268
    24 7unc:g (3.0) BS01 dna ? GO:0000786 ... Q6AZJ8 35709268
    25 7unc:g (3.0) BS02 dna ? GO:0000786 ... Q6AZJ8 35709268
    26 7unc:h (3.0) BS01 dna ? GO:0000786 ... P02281 35709268
    27 7unc:h (3.0) BS02 dna ? GO:0000786 ... P02281 35709268
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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