Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7syr:A (3.6) BS01 rna ? GO:0000049 ... P47813 35822879
    2 7syr:A (3.6) BS02 rna ? GO:0000049 ... P47813 35822879
    3 7syr:B (3.6) BS01 rna ? GO:0000028 ... G1TLT8 35822879
    4 7syr:C (3.6) BS01 rna ? GO:0003735 ... G1SS70 35822879
    5 7syr:D (3.6) BS01 rna ? GO:0003723 ... G1SV32 35822879
    6 7syr:D (3.6) BS02 rna ? GO:0003723 ... G1SV32 35822879
    7 7syr:E (3.6) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 35822879
    8 7syr:E (3.6) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 35822879
    9 7syr:F (3.6) BS01 rna ? GO:0003723 ... G1TA47 35822879
    10 7syr:G (3.6) BS01 rna ? GO:0000028 ... G1TFM5 35822879
    11 7syr:H (3.6) BS01 rna ? GO:0003735 ... A0A5K1UJS7 35822879
    12 7syr:I (3.6) BS01 rna ? GO:0003735 ... G1SVB0 35822879
    13 7syr:J (3.6) BS01 rna ? GO:0000462 ... G1TJW1 35822879
    14 7syr:K (3.6) BS01 rna ? GO:0003723 ... B7NZS8 35822879
    15 7syr:L (3.6) BS01 rna ? GO:0003723 ... G1TPV3 35822879
    16 7syr:M (3.6) BS01 rna ? GO:0003735 ... G1TRM4 35822879
    17 7syr:N (3.6) BS01 rna ? GO:0003735 ... G1SFR8 35822879
    18 7syr:O (3.6) BS01 rna ? GO:0003735 ... G1SP51 35822879
    19 7syr:P (3.6) BS01 rna ? GO:0000028 ... G1T1F0 35822879
    20 7syr:P (3.6) BS02 rna ? GO:0000028 ... G1T1F0 35822879
    21 7syr:Q (3.6) BS01 rna ? GO:0000028 ... G1U0Q2 35822879
    22 7syr:R (3.6) BS01 rna ? GO:0000462 ... G1SGX4 35822879
    23 7syr:S (3.6) BS01 rna ? GO:0003735 ... G1TU13 35822879
    24 7syr:T (3.6) BS01 rna ? GO:0003676 ... G1TPG3 35822879
    25 7syr:U (3.6) BS01 rna ? GO:0000028 ... G1TN62 35822879
    26 7syr:V (3.6) BS01 rna ? GO:0003723 ... G1SIZ2 35822879
    27 7syr:X (3.6) BS01 rna ? GO:0003735 ... G1TG89 35822879
    28 7syr:Y (3.6) BS01 rna ? GO:0003735 ... G1SZ47 35822879
    29 7syr:Z (3.6) BS01 rna ? GO:0003735 ... G1T3D8 35822879
    30 7syr:a (3.6) BS01 rna ? GO:0003735 ... G1TDB3 35822879
    31 7syr:b (3.6) BS01 rna ? GO:0003735 ... G1TFE8 35822879
    32 7syr:b (3.6) BS02 rna ? GO:0003735 ... G1TFE8 35822879
    33 7syr:b (3.6) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    34 7syr:c (3.6) BS01 rna ? GO:0000028 ... G1TZ76 35822879
    35 7syr:c (3.6) BS02 rna ? GO:0000028 ... G1TZ76 35822879
    36 7syr:d (3.6) BS01 rna ? GO:0000028 ... G1TIB4 35822879
    37 7syr:d (3.6) BS02 rna ? GO:0000028 ... G1TIB4 35822879
    38 7syr:e (3.6) BS01 rna ? GO:0003735 ... G1U7M4 35822879
    39 7syr:f (3.6) BS01 rna ? GO:0003735 ... G1T8A2 35822879
    40 7syr:g (3.6) BS01 rna ? GO:0003735 ... G1SK22 35822879
    41 7syr:h (3.6) BS01 rna ? GO:0001891 ... G1SJB4 35822879
    42 7syr:j (3.6) BS01 rna ? GO:0000423 ... P05198 35822879
    43 7syr:j (3.6) BS02 rna ? GO:0000423 ... P05198 35822879
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218