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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ssn:B (3.2) BS01 rna ? GO:0000027 ... P0A7N4 34903725
    2 7ssn:C (3.2) BS01 rna ? GO:0000027 ... P0A7N9 34903725
    3 7ssn:D (3.2) BS01 rna ? GO:0002181 ... P0A7P5 34903725
    4 7ssn:E (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 34903725
    5 7ssn:F (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 34903725
    6 7ssn:G (3.2) BS01 rna ? GO:0000028 ... P0A7V0 34903725
    7 7ssn:H (3.2) BS01 rna ? GO:0003676 ... P0A7V3 34903725
    8 7ssn:I (3.2) BS01 rna ? GO:0000028 ... P0A7V8 34903725
    9 7ssn:J (3.2) BS01 rna ? GO:0000028 ... P0A7W1 34903725
    10 7ssn:K (3.2) BS01 rna ? GO:0003735 ... P02358 34903725
    11 7ssn:L (3.2) BS01 rna ? GO:0003723 ... P02359 34903725
    12 7ssn:L (3.2) BS02 rna ? GO:0003723 ... P02359 34903725
    13 7ssn:M (3.2) BS01 rna ? GO:0000028 ... P0A7W7 34903725
    14 7ssn:N (3.2) BS01 rna ? GO:0000049 ... P0A7X3 34903725
    15 7ssn:O (3.2) BS01 rna ? GO:0000049 ... P0A7R5 34903725
    16 7ssn:P (3.2) BS01 rna ? GO:0002181 ... P0A7R9 34903725
    17 7ssn:Q (3.2) BS01 rna ? GO:0000049 ... P0A7S3 34903725
    18 7ssn:R (3.2) BS01 rna ? GO:0000049 ... P0A7S9 34903725
    19 7ssn:S (3.2) BS01 rna ? GO:0000028 ... P0AG59 34903725
    20 7ssn:T (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 34903725
    21 7ssn:T (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 34903725
    22 7ssn:U (3.2) BS01 rna ? GO:0000028 ... P0A7T3 34903725
    23 7ssn:V (3.2) BS01 rna ? GO:0000028 ... P0AG63 34903725
    24 7ssn:W (3.2) BS01 rna ? GO:0003735 ... P0A7T7 34903725
    25 7ssn:X (3.2) BS01 rna ? GO:0003723 ... P0A7U3 34903725
    26 7ssn:Y (3.2) BS01 rna ? GO:0000028 ... P0A7U7 34903725
    27 7ssn:Z (3.2) BS01 rna ? GO:0000028 ... P68679 34903725
    28 7ssn:Z (3.2) BS02 rna ? GO:0000028 ... P68679 34903725
    29 7ssn:b (3.2) BS01 rna ? GO:0000027 ... P60422 34903725
    30 7ssn:b (3.2) BS02 rna ? GO:0000027 ... P60422 34903725
    31 7ssn:c (3.2) BS01 rna ? GO:0000027 ... P60438 34903725
    32 7ssn:d (3.2) BS01 rna ? GO:0001070 ... P60723 34903725
    33 7ssn:e (3.2) BS01 rna ? GO:0000027 ... P62399 34903725
    34 7ssn:e (3.2) BS02 rna ? GO:0000027 ... P62399 34903725
    35 7ssn:f (3.2) BS01 rna ? GO:0000027 ... P0AG55 34903725
    36 7ssn:i (3.2) BS01 rna ? GO:0000027 ... P0A7J7 34903725
    37 7ssn:j (3.2) BS01 rna ? GO:0002181 ... P0AA10 34903725
    38 7ssn:k (3.2) BS01 rna ? GO:0002181 ... P0ADY3 34903725
    39 7ssn:k (3.2) BS02 rna ? GO:0002181 ... P0ADY3 34903725
    40 7ssn:l (3.2) BS01 rna ? GO:0002181 ... P02413 34903725
    41 7ssn:m (3.2) BS01 rna ? GO:0000027 ... P0ADY7 34903725
    42 7ssn:m (3.2) BS02 rna ? GO:0000027 ... P0ADY7 34903725
    43 7ssn:n (3.2) BS01 rna ? GO:0000027 ... P0AG44 34903725
    44 7ssn:o (3.2) BS01 rna ? GO:0002181 ... P0C018 34903725
    45 7ssn:o (3.2) BS02 rna ? GO:0002181 ... P0C018 34903725
    46 7ssn:p (3.2) BS01 rna ? GO:0000027 ... P0A7K6 34903725
    47 7ssn:p (3.2) BS02 rna ? GO:0000027 ... P0A7K6 34903725
    48 7ssn:q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 34903725
    49 7ssn:r (3.2) BS01 rna ? GO:0002181 ... P0AG48 34903725
    50 7ssn:s (3.2) BS01 rna ? GO:0002181 ... P61175 34903725
    51 7ssn:t (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 34903725
    52 7ssn:u (3.2) BS01 rna ? GO:0000027 ... P60624 34903725
    53 7ssn:v (3.2) BS01 rna ? GO:0000027 ... P68919 34903725
    54 7ssn:v (3.2) BS02 rna ? GO:0000027 ... P68919 34903725
    55 7ssn:w (3.2) BS01 rna ? GO:0003735 ... P0A7L8 34903725
    56 7ssn:w (3.2) BS02 rna ? GO:0003735 ... P0A7L8 34903725
    57 7ssn:x (3.2) BS01 rna ? GO:0000027 ... P0A7M2 34903725
    58 7ssn:x (3.2) BS02 rna ? GO:0000027 ... P0A7M2 34903725
    59 7ssn:y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 34903725
    60 7ssn:z (3.2) BS01 rna ? GO:0000027 ... P0AG51 34903725
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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