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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rgq:A (3.9) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    2 7rgq:A (3.9) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    3 7rgq:A (3.9) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 35013599
    4 7rgq:A (3.9) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5 7rgq:A (3.9) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    6 7rgq:B (3.9) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    7 7rgq:B (3.9) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    8 7rgq:B (3.9) BS03 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    9 7rgq:B (3.9) BS04 IMP 1.1.1.205 GO:0000166 ... P20839 35013599
    10 7rgq:B (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    11 7rgq:B (3.9) BS06 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    12 7rgq:C (3.9) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    13 7rgq:C (3.9) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    14 7rgq:C (3.9) BS03 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    15 7rgq:C (3.9) BS04 IMP 1.1.1.205 GO:0000166 ... P20839 35013599
    16 7rgq:C (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    17 7rgq:C (3.9) BS06 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    18 7rgq:C (3.9) BS07 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    19 7rgq:D (3.9) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    20 7rgq:D (3.9) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    21 7rgq:D (3.9) BS03 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    22 7rgq:D (3.9) BS04 IMP 1.1.1.205 GO:0000166 ... P20839 35013599
    23 7rgq:D (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    24 7rgq:D (3.9) BS06 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    25 7rgq:E (3.9) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    26 7rgq:E (3.9) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    27 7rgq:E (3.9) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 35013599
    28 7rgq:E (3.9) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    29 7rgq:E (3.9) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    30 7rgq:E (3.9) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    31 7rgq:F (3.9) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    32 7rgq:F (3.9) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    33 7rgq:F (3.9) BS03 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    34 7rgq:F (3.9) BS04 IMP 1.1.1.205 GO:0000166 ... P20839 35013599
    35 7rgq:F (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    36 7rgq:F (3.9) BS06 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    37 7rgq:G (3.9) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    38 7rgq:G (3.9) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    39 7rgq:G (3.9) BS03 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    40 7rgq:G (3.9) BS04 IMP 1.1.1.205 GO:0000166 ... P20839 35013599
    41 7rgq:G (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    42 7rgq:G (3.9) BS06 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    43 7rgq:H (3.9) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    44 7rgq:H (3.9) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 35013599
    45 7rgq:H (3.9) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 35013599
    46 7rgq:H (3.9) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    47 7rgq:H (3.9) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 35013599
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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