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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7r4c:B (2.3) BS01 SF4 7.1.1.2 GO:0003954 ... P42026 36701435
    2 7r4c:D (2.3) BS01 SF4 7.1.1.2 GO:0003954 ... P17694 36701435
    3 7r4c:E (2.3) BS01 FES 7.1.1.2 GO:0003954 ... P04394 36701435
    4 7r4c:F (2.3) BS01 FMN 7.1.1.2 GO:0005739 ... P25708 36701435
    5 7r4c:F (2.3) BS02 SF4 7.1.1.2 GO:0005739 ... P25708 36701435
    6 7r4c:G (2.3) BS01 SF4 7.1.1.2 GO:0005739 ... P15690 36701435
    7 7r4c:G (2.3) BS02 SF4 7.1.1.2 GO:0005739 ... P15690 36701435
    8 7r4c:G (2.3) BS03 FES 7.1.1.2 GO:0005739 ... P15690 36701435
    9 7r4c:H (2.3) BS01 I49 7.1.1.2 GO:0003954 ... P03887 36701435
    10 7r4c:I (2.3) BS01 SF4 7.1.1.2 GO:0003954 ... P42028 36701435
    11 7r4c:I (2.3) BS02 SF4 7.1.1.2 GO:0003954 ... P42028 36701435
    12 7r4c:N (2.3) BS01 I49 7.1.1.2 GO:0005739 ... P03892 36701435
    13 7r4c:O (2.3) BS01 GTP ? GO:0005737 ... P34942 36701435
    14 7r4c:P (2.3) BS01 NDP ? GO:0005739 ... P34943 36701435
    15 7r4c:R (2.3) BS01 ZN ? GO:0005739 ... P23934 36701435
    16 7r4c:T (2.3) BS01 EHZ ? GO:0000035 ... P52505 36701435
    17 7r4c:W (2.3) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    18 7r4c:d (2.3) BS01 I49 ? GO:0005739 ... Q02827 36701435
    19 7r4c:h (2.3) BS01 I49 ? GO:0005739 ... Q02380 36701435
    20 7r4c:n (2.3) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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