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BioLiP
Download all results in tab-seperated text for 102 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qiz:AA (2.38) BS01 rna ? GO:0003735 ... P49215 35643637
    2 7qiz:BA (2.38) BS01 rna ? GO:0000447 ... A0A3Q7G7P4 35643637
    3 7qiz:CA (2.38) BS01 rna ? GO:0003735 ... K4D3L7 35643637
    4 7qiz:D (2.38) BS01 rna ? GO:0002181 ... P29766 35643637
    5 7qiz:D (2.38) BS02 rna ? GO:0002181 ... P29766 35643637
    6 7qiz:DA (2.38) BS01 rna ? GO:0003729 ... A0A3Q7GRY8 35643637
    7 7qiz:DA (2.38) BS02 ZN ? GO:0003729 ... A0A3Q7GRY8 35643637
    8 7qiz:E (2.38) BS01 rna ? GO:0003723 ... Q6SKP4 35643637
    9 7qiz:EA (2.38) BS01 rna ? GO:0003723 ... A0A3Q7G7F0 35643637
    10 7qiz:F (2.38) BS01 rna ? GO:0003723 ... A0A3Q7HW81 35643637
    11 7qiz:F (2.38) BS02 rna ? GO:0003723 ... A0A3Q7HW81 35643637
    12 7qiz:FA (2.38) BS01 rna ? GO:0003735 ... A0A3Q7HSH1 35643637
    13 7qiz:G (2.38) BS01 rna ? GO:0000027 ... A0A3Q7H274 35643637
    14 7qiz:G (2.38) BS02 rna ? GO:0000027 ... A0A3Q7H274 35643637
    15 7qiz:GA (2.38) BS01 rna ? GO:0003723 ... K4ATQ2 35643637
    16 7qiz:H (2.38) BS01 rna ? GO:0000027 ... A0A3Q7GMA5 35643637
    17 7qiz:HA (2.38) BS01 rna ? GO:0003735 ... K4CYU9 35643637
    18 7qiz:HA (2.38) BS02 rna ? GO:0003735 ... K4CYU9 35643637
    19 7qiz:I (2.38) BS01 rna ? GO:0000463 ... M1BRF8 35643637
    20 7qiz:I (2.38) BS02 rna ? GO:0000463 ... M1BRF8 35643637
    21 7qiz:I (2.38) BS03 MG ? GO:0000463 ... M1BRF8 35643637
    22 7qiz:IA (2.38) BS01 rna ? GO:0000028 ... Q38JI8 35643637
    23 7qiz:J (2.38) BS01 rna ? GO:0042254 ... A0A3Q7GV73 35643637
    24 7qiz:J (2.38) BS02 rna ? GO:0042254 ... A0A3Q7GV73 35643637
    25 7qiz:JA (2.38) BS01 rna ? GO:0003735 ... A0A1U7YEG5 35643637
    26 7qiz:K (2.38) BS01 rna ? GO:0002181 ... A0A3Q7JDZ0 35643637
    27 7qiz:KA (2.38) BS01 rna ? GO:0003729 ... A0A3Q7I5D6 35643637
    28 7qiz:L (2.38) BS01 rna ? GO:0000027 ... Q3SC85 35643637
    29 7qiz:L (2.38) BS02 rna ? GO:0000027 ... Q3SC85 35643637
    30 7qiz:LA (2.38) BS01 rna N/A GO:0003735 ... N/A 35643637
    31 7qiz:M (2.38) BS01 rna ? GO:0003723 ... K4CG62 35643637
    32 7qiz:M (2.38) BS02 rna ? GO:0003723 ... K4CG62 35643637
    33 7qiz:MA (2.38) BS01 rna ? GO:0003735 ... A0A0V0GRY5 35643637
    34 7qiz:N (2.38) BS01 rna ? GO:0003723 ... A0A3Q7JCM5 35643637
    35 7qiz:N (2.38) BS02 rna ? GO:0003723 ... A0A3Q7JCM5 35643637
    36 7qiz:NA (2.38) BS01 rna ? GO:0003723 ... A0A3Q7HBR5 35643637
    37 7qiz:NA (2.38) BS02 BGC ? GO:0003723 ... A0A3Q7HBR5 35643637
    38 7qiz:O (2.38) BS01 rna ? GO:0003723 ... A0A3Q7J0J5 35643637
    39 7qiz:OA (2.38) BS01 rna ? GO:0000028 ... A0A3Q7IVL4 35643637
    40 7qiz:P (2.38) BS01 rna ? GO:0002181 ... A0A3Q7HQH0 35643637
    41 7qiz:P (2.38) BS02 rna ? GO:0002181 ... A0A3Q7HQH0 35643637
    42 7qiz:PA (2.38) BS01 rna ? GO:0003723 ... A0A3Q7JYM3 35643637
    43 7qiz:Q (2.38) BS01 rna 3.1.1.11 GO:0003735 ... A0A3Q7HGG4 35643637
    44 7qiz:QA (2.38) BS01 rna ? GO:0000028 ... A0A3Q7F5X2 35643637
    45 7qiz:QA (2.38) BS02 rna ? GO:0000028 ... A0A3Q7F5X2 35643637
    46 7qiz:R (2.38) BS01 rna ? GO:0002181 ... A0A3Q7FNQ5 35643637
    47 7qiz:R (2.38) BS02 rna ? GO:0002181 ... A0A3Q7FNQ5 35643637
    48 7qiz:RA (2.38) BS01 rna ? GO:0000462 ... A0A3Q7GDB0 35643637
    49 7qiz:S (2.38) BS01 rna ? GO:0003723 ... A0A3Q7I5W4 35643637
    50 7qiz:T (2.38) BS01 rna ? GO:0003723 ... A0A3Q7GQ29 35643637
    51 7qiz:T (2.38) BS02 rna ? GO:0003723 ... A0A3Q7GQ29 35643637
    52 7qiz:TA (2.38) BS01 rna ? GO:0003676 ... A0A3Q7FJL7 35643637
    53 7qiz:TA (2.38) BS02 MG ? GO:0003676 ... A0A3Q7FJL7 35643637
    54 7qiz:U (2.38) BS01 rna ? GO:0003735 ... A0A3Q7IGB1 35643637
    55 7qiz:U (2.38) BS02 rna ? GO:0003735 ... A0A3Q7IGB1 35643637
    56 7qiz:UA (2.38) BS01 rna ? GO:0000028 ... A0A3Q7FTS1 35643637
    57 7qiz:V (2.38) BS01 rna ? GO:0003735 ... A0A3Q7IJQ0 35643637
    58 7qiz:V (2.38) BS02 rna ? GO:0003735 ... A0A3Q7IJQ0 35643637
    59 7qiz:VA (2.38) BS01 rna ? GO:0003723 ... A0A3Q7EMX2 35643637
    60 7qiz:W (2.38) BS01 rna ? GO:0002181 ... A0A3Q7I7E8 35643637
    61 7qiz:WA (2.38) BS01 rna ? GO:0000028 ... K4B4Z0 35643637
    62 7qiz:X (2.38) BS01 rna ? GO:0003735 ... K4CUW3 35643637
    63 7qiz:XA (2.38) BS01 rna ? GO:0002181 ... A0A3Q7ITW7 35643637
    64 7qiz:XA (2.38) BS02 ZN ? GO:0002181 ... A0A3Q7ITW7 35643637
    65 7qiz:Y (2.38) BS01 rna ? GO:0002181 ... A0A3Q7IN69 35643637
    66 7qiz:YA (2.38) BS01 rna 2.7.11.24 GO:0043022 ... A0A3Q7GX91 35643637
    67 7qiz:Z (2.38) BS01 rna ? GO:0000027 ... A0A3Q7INK3 35643637
    68 7qiz:Z (2.38) BS02 rna ? GO:0000027 ... A0A3Q7INK3 35643637
    69 7qiz:ZA (2.38) BS01 rna ? GO:0003735 ... A0A3Q7F3F2 35643637
    70 7qiz:a (2.38) BS01 rna ? GO:0002181 ... A0A3Q7FBC6 35643637
    71 7qiz:a (2.38) BS02 rna ? GO:0002181 ... A0A3Q7FBC6 35643637
    72 7qiz:b (2.38) BS01 rna ? GO:0003735 ... A0A3Q7GZ83 35643637
    73 7qiz:c (2.38) BS01 rna ? GO:0003729 ... A0A3Q7GZ10 35643637
    74 7qiz:d (2.38) BS01 rna ? GO:0002181 ... A0A3Q7GK12 35643637
    75 7qiz:e (2.38) BS01 rna N/A GO:0003723 ... N/A 35643637
    76 7qiz:f (2.38) BS01 rna ? GO:0002181 ... A0A3Q7JRW8 35643637
    77 7qiz:g (2.38) BS01 rna ? GO:0003735 ... A0A3Q7F2B5 35643637
    78 7qiz:h (2.38) BS01 rna ? GO:0002181 ... A0A3Q7FPS6 35643637
    79 7qiz:i (2.38) BS01 rna ? GO:0003735 ... A0A3Q7GDM4 35643637
    80 7qiz:j (2.38) BS01 rna ? GO:0000463 ... Q53U38 35643637
    81 7qiz:j (2.38) BS02 rna ? GO:0000463 ... Q53U38 35643637
    82 7qiz:k (2.38) BS01 rna ? GO:0003735 ... A0A3Q7GUG2 35643637
    83 7qiz:l (2.38) BS01 rna ? GO:0003723 ... A0A3Q7FV98 35643637
    84 7qiz:l (2.38) BS02 rna ? GO:0003723 ... A0A3Q7FV98 35643637
    85 7qiz:l (2.38) BS03 ZN ? GO:0003723 ... A0A3Q7FV98 35643637
    86 7qiz:m (2.38) BS01 rna ? GO:0003735 ... P46291 35643637
    87 7qiz:n (2.38) BS01 rna ? GO:0003735 ... A0A3Q7J415 35643637
    88 7qiz:n (2.38) BS02 rna ? GO:0003735 ... A0A3Q7J415 35643637
    89 7qiz:o (2.38) BS01 rna ? GO:0003729 ... K4B017 35643637
    90 7qiz:o (2.38) BS02 ZN ? GO:0003729 ... K4B017 35643637
    91 7qiz:p (2.38) BS01 rna ? GO:0003735 ... A0A3Q7FPL2 35643637
    92 7qiz:p (2.38) BS02 rna ? GO:0003735 ... A0A3Q7FPL2 35643637
    93 7qiz:p (2.38) BS03 ZN ? GO:0003735 ... A0A3Q7FPL2 35643637
    94 7qiz:q (2.38) BS01 rna ? GO:0003735 ... K4CND1 35643637
    95 7qiz:q (2.38) BS02 ZN ? GO:0003735 ... K4CND1 35643637
    96 7qiz:r (2.38) BS01 rna ? GO:0003735 ... A0A3Q7FVJ9 35643637
    97 7qiz:u (2.38) BS01 rna ? GO:0000028 ... A0A3Q7H1U4 35643637
    98 7qiz:v (2.38) BS01 rna ? GO:0003735 ... A0A3Q7I881 35643637
    99 7qiz:w (2.38) BS01 rna ? GO:0003723 ... A0A3Q7GQU3 35643637
    100 7qiz:x (2.38) BS01 rna ? GO:0003735 ... A0A3Q7H0E8 35643637
    101 7qiz:y (2.38) BS01 rna ? GO:0000462 ... A0A3Q7HJ03 35643637
    102 7qiz:z (2.38) BS01 rna ? GO:0003735 ... K4C998 35643637
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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