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BioLiP
Download all results in tab-seperated text for 83 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7qep:C0 (2.7) BS01 rna ? GO:0005840 ... Q8SS17 N/A
    2 7qep:C1 (2.7) BS01 rna ? GO:0003735 ... Q8SS53 N/A
    3 7qep:C2 (2.7) BS01 rna ? GO:0005840 ... Q8SSK9 N/A
    4 7qep:C3 (2.7) BS01 rna ? GO:0003735 ... Q8SRB3 N/A
    5 7qep:C4 (2.7) BS01 rna ? GO:0000028 ... Q8SSA6 N/A
    6 7qep:C5 (2.7) BS01 rna ? GO:0000028 ... Q8SRE7 N/A
    7 7qep:C6 (2.7) BS01 rna ? GO:0000462 ... Q8SSC2 N/A
    8 7qep:C7 (2.7) BS01 rna ? GO:0003735 ... Q8SSF9 N/A
    9 7qep:C8 (2.7) BS01 rna ? GO:0003676 ... Q8SRP2 N/A
    10 7qep:C9 (2.7) BS01 rna ? GO:0000028 ... Q8SQS8 N/A
    11 7qep:D0 (2.7) BS01 rna ? GO:0005840 ... Q8SQX6 N/A
    12 7qep:D2 (2.7) BS01 rna ? GO:0003735 ... Q8SQL9 N/A
    13 7qep:D3 (2.7) BS01 rna ? GO:0003735 ... Q8SR65 N/A
    14 7qep:D4 (2.7) BS01 rna ? GO:0003735 ... Q8SR06 N/A
    15 7qep:D5 (2.7) BS01 rna ? GO:0003735 ... Q8STD9 N/A
    16 7qep:D6 (2.7) BS01 rna ? GO:0003729 ... Q8SRN2 N/A
    17 7qep:D6 (2.7) BS02 ZN ? GO:0003729 ... Q8SRN2 N/A
    18 7qep:D7 (2.7) BS01 rna ? GO:0000028 ... Q8SS34 N/A
    19 7qep:D7 (2.7) BS02 ZN ? GO:0000028 ... Q8SS34 N/A
    20 7qep:D8 (2.7) BS01 rna ? GO:0000028 ... Q8SQM2 N/A
    21 7qep:D9 (2.7) BS01 rna N/A GO:0003735 ... N/A N/A
    22 7qep:E1 (2.7) BS01 rna ? GO:0005634 ... Q8SWB3 N/A
    23 7qep:L2 (2.7) BS01 rna ? GO:0002181 ... Q8SSM6 N/A
    24 7qep:L3 (2.7) BS01 rna ? GO:0003723 ... Q8SQI3 N/A
    25 7qep:L4 (2.7) BS01 rna ? GO:0003723 ... Q8SRC2 N/A
    26 7qep:L5 (2.7) BS01 rna ? GO:0000027 ... Q8SRQ3 N/A
    27 7qep:L5 (2.7) BS02 rna ? GO:0000027 ... Q8SRQ3 N/A
    28 7qep:L7 (2.7) BS01 rna ? GO:0000463 ... Q8SS93 N/A
    29 7qep:L7 (2.7) BS02 rna ? GO:0000463 ... Q8SS93 N/A
    30 7qep:L8 (2.7) BS01 rna ? GO:0000470 ... Q8SSG1 N/A
    31 7qep:L9 (2.7) BS01 rna ? GO:0002181 ... Q8SSF7 N/A
    32 7qep:L9 (2.7) BS02 AMP ? GO:0002181 ... Q8SSF7 N/A
    33 7qep:M0 (2.7) BS01 rna ? GO:0000027 ... Q8SR96 N/A
    34 7qep:M0 (2.7) BS02 rna ? GO:0000027 ... Q8SR96 N/A
    35 7qep:M1 (2.7) BS01 rna ? GO:0003723 ... Q8SSG9 N/A
    36 7qep:M1 (2.7) BS02 rna ? GO:0003723 ... Q8SSG9 N/A
    37 7qep:M3 (2.7) BS01 rna ? GO:0003723 ... Q8SSC1 N/A
    38 7qep:M5 (2.7) BS01 rna ? GO:0002181 ... Q8SQU2 N/A
    39 7qep:M6 (2.7) BS01 rna ? GO:0003729 ... Q8SS16 N/A
    40 7qep:M7 (2.7) BS01 rna ? GO:0002181 ... Q8SRH7 N/A
    41 7qep:M8 (2.7) BS01 rna ? GO:0003723 ... Q8SS76 N/A
    42 7qep:M9 (2.7) BS01 rna ? GO:0003723 ... Q8SRP5 N/A
    43 7qep:MD (2.7) BS01 rna ? N/A Q8SWQ4 N/A
    44 7qep:MS (2.7) BS01 rna ? N/A I7IV41 N/A
    45 7qep:N0 (2.7) BS01 rna ? GO:0003735 ... Q8SRD7 N/A
    46 7qep:N0 (2.7) BS02 rna ? GO:0003735 ... Q8SRD7 N/A
    47 7qep:N0 (2.7) BS03 AMP ? GO:0003735 ... Q8SRD7 N/A
    48 7qep:N1 (2.7) BS01 rna ? GO:0003735 ... Q8SRW8 N/A
    49 7qep:N1 (2.7) BS02 rna ? GO:0003735 ... Q8SRW8 N/A
    50 7qep:N2 (2.7) BS01 rna ? GO:0002181 ... Q8SS49 N/A
    51 7qep:N3 (2.7) BS01 rna ? GO:0003735 ... Q8SRA7 N/A
    52 7qep:N4 (2.7) BS01 rna ? GO:0005840 ... Q8SUZ9 N/A
    53 7qep:N5 (2.7) BS01 rna ? GO:0000027 ... Q8SR87 N/A
    54 7qep:N6 (2.7) BS01 rna ? GO:0002181 ... Q8SRE6 N/A
    55 7qep:N7 (2.7) BS01 rna ? GO:0003735 ... Q8SS64 N/A
    56 7qep:N8 (2.7) BS01 rna ? GO:0003735 ... O62581 N/A
    57 7qep:N9 (2.7) BS01 rna ? GO:0002181 ... I7JTZ6 N/A
    58 7qep:O0 (2.7) BS01 rna ? GO:0003723 ... Q8SRU1 N/A
    59 7qep:O1 (2.7) BS01 rna ? GO:0003735 ... Q8SSC8 N/A
    60 7qep:O2 (2.7) BS01 rna ? GO:0003735 ... Q8SS18 N/A
    61 7qep:O3 (2.7) BS01 rna ? GO:0002181 ... Q8SSF3 N/A
    62 7qep:O4 (2.7) BS01 rna ? GO:0003735 ... Q8SSA2 N/A
    63 7qep:O5 (2.7) BS01 rna ? GO:0000463 ... Q8ST62 N/A
    64 7qep:O6 (2.7) BS01 rna ? GO:0003735 ... Q8SRP1 N/A
    65 7qep:O7 (2.7) BS01 rna ? GO:0003723 ... Q8SRH5 N/A
    66 7qep:O7 (2.7) BS02 ZN ? GO:0003723 ... Q8SRH5 N/A
    67 7qep:O9 (2.7) BS01 rna ? GO:0003735 ... Q8SQP8 N/A
    68 7qep:P0 (2.7) BS01 rna ? GO:0003735 ... Q8SRH8 N/A
    69 7qep:P0 (2.7) BS02 ZN ? GO:0003735 ... Q8SRH8 N/A
    70 7qep:P2 (2.7) BS01 rna ? GO:0003735 ... Q8SR18 N/A
    71 7qep:P2 (2.7) BS02 ZN ? GO:0003735 ... Q8SR18 N/A
    72 7qep:P3 (2.7) BS01 rna ? GO:0003735 ... Q8SRJ2 N/A
    73 7qep:P3 (2.7) BS02 ZN ? GO:0003735 ... Q8SRJ2 N/A
    74 7qep:S0 (2.7) BS01 rna ? GO:0000028 ... Q8SS60 N/A
    75 7qep:S1 (2.7) BS01 rna ? GO:0003735 ... Q8SS05 N/A
    76 7qep:S2 (2.7) BS01 rna ? GO:0003723 ... Q8SRG6 N/A
    77 7qep:S3 (2.7) BS01 rna ? GO:0003723 ... Q8SQM3 N/A
    78 7qep:S4 (2.7) BS01 rna ? GO:0003723 ... Q8SRB9 N/A
    79 7qep:S5 (2.7) BS01 rna ? GO:0000028 ... Q8SS72 N/A
    80 7qep:S6 (2.7) BS01 rna ? GO:0003735 ... Q8SRY0 N/A
    81 7qep:S7 (2.7) BS01 rna ? GO:0005737 ... Q8SQX3 N/A
    82 7qep:S8 (2.7) BS01 rna ? GO:0000462 ... Q8SWC9 N/A
    83 7qep:S9 (2.7) BS01 rna ? GO:0003723 ... Q8SRW6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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