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BioLiP
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pt7:2 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 35614055
    2 7pt7:2 (3.8) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35614055
    3 7pt7:2 (3.8) BS03 ADP 3.6.4.12 GO:0000727 ... P29469 35614055
    4 7pt7:3 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 35614055
    5 7pt7:3 (3.8) BS02 BEF 3.6.4.12 GO:0000727 ... P24279 35614055
    6 7pt7:3 (3.8) BS03 BEF 3.6.4.12 GO:0000727 ... P24279 35614055
    7 7pt7:4 (3.8) BS01 ZN 3.6.4.12 GO:0000727 ... P30665 35614055
    8 7pt7:4 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 35614055
    9 7pt7:4 (3.8) BS03 BEF 3.6.4.12 GO:0000727 ... P30665 35614055
    10 7pt7:4 (3.8) BS04 ADP 3.6.4.12 GO:0000727 ... P30665 35614055
    11 7pt7:5 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 35614055
    12 7pt7:5 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 35614055
    13 7pt7:5 (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 35614055
    14 7pt7:6 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 35614055
    15 7pt7:6 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 35614055
    16 7pt7:6 (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 35614055
    17 7pt7:7 (3.8) BS01 BEF 3.6.4.12 GO:0000727 ... P38132 35614055
    18 7pt7:7 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 35614055
    19 7pt7:7 (3.8) BS03 BEF 3.6.4.12 GO:0000727 ... P38132 35614055
    20 7pt7:7 (3.8) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 35614055
    21 7pt7:7 (3.8) BS05 ADP 3.6.4.12 GO:0000727 ... P38132 35614055
    22 7pt7:8 (3.8) BS01 peptide 2.7.11.1 GO:0000727 ... P06243 35614055
    23 7pt7:8 (3.8) BS02 ADP 2.7.11.1 GO:0000727 ... P06243 35614055
    24 7pt7:8 (3.8) BS03 MG 2.7.11.1 GO:0000727 ... P06243 35614055
    25 7pt7:8 (3.8) BS04 BEF 2.7.11.1 GO:0000727 ... P06243 35614055
    26 7pt7:8 (3.8) BS05 MG 2.7.11.1 GO:0000727 ... P06243 35614055
    27 7pt7:8 (3.8) BS06 ZN 2.7.11.1 GO:0000727 ... P06243 35614055
    28 7pt7:9 (3.8) BS01 ZN ? GO:0000775 ... P32325 35614055
    29 7pt7:B (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 35614055
    30 7pt7:B (3.8) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35614055
    31 7pt7:B (3.8) BS03 ADP 3.6.4.12 GO:0000727 ... P29469 35614055
    32 7pt7:C (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 35614055
    33 7pt7:C (3.8) BS02 BEF 3.6.4.12 GO:0000727 ... P24279 35614055
    34 7pt7:C (3.8) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 35614055
    35 7pt7:C (3.8) BS04 BEF 3.6.4.12 GO:0000727 ... P24279 35614055
    36 7pt7:D (3.8) BS01 ZN 3.6.4.12 GO:0000727 ... P30665 35614055
    37 7pt7:D (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 35614055
    38 7pt7:D (3.8) BS03 BEF 3.6.4.12 GO:0000727 ... P30665 35614055
    39 7pt7:D (3.8) BS04 ADP 3.6.4.12 GO:0000727 ... P30665 35614055
    40 7pt7:E (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 35614055
    41 7pt7:E (3.8) BS02 BEF 3.6.4.12 GO:0000727 ... P29496 35614055
    42 7pt7:E (3.8) BS03 ADP 3.6.4.12 GO:0000727 ... P29496 35614055
    43 7pt7:E (3.8) BS04 ZN 3.6.4.12 GO:0000727 ... P29496 35614055
    44 7pt7:F (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 35614055
    45 7pt7:F (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P53091 35614055
    46 7pt7:F (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 35614055
    47 7pt7:G (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 35614055
    48 7pt7:G (3.8) BS02 BEF 3.6.4.12 GO:0000727 ... P38132 35614055
    49 7pt7:G (3.8) BS03 ZN 3.6.4.12 GO:0000727 ... P38132 35614055
    50 7pt7:G (3.8) BS04 ADP 3.6.4.12 GO:0000727 ... P38132 35614055
    51 7pt7:G (3.8) BS05 BEF 3.6.4.12 GO:0000727 ... P38132 35614055
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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