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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pny:0 (3.06) BS01 rna ? GO:0003735 ... P82930 35676484
    2 7pny:3 (3.06) BS01 rna ? GO:0005515 ... Q9NWT8 35676484
    3 7pny:B (3.06) BS01 rna ? GO:0003735 ... Q9Y399 35676484
    4 7pny:B (3.06) BS02 MG ? GO:0003735 ... Q9Y399 35676484
    5 7pny:C (3.06) BS01 rna ? GO:0003723 ... Q96EL2 35676484
    6 7pny:D (3.06) BS01 rna ? GO:0003723 ... P82675 35676484
    7 7pny:E (3.06) BS01 rna ? GO:0003735 ... P82932 35676484
    8 7pny:F (3.06) BS01 rna ? GO:0000028 ... Q9Y2R9 35676484
    9 7pny:G (3.06) BS01 rna ? GO:0003723 ... P82933 35676484
    10 7pny:H (3.06) BS01 rna ? GO:0003674 ... P82664 35676484
    11 7pny:I (3.06) BS01 rna ? GO:0003723 ... P82912 35676484
    12 7pny:J (3.06) BS01 rna ? GO:0003723 ... O15235 35676484
    13 7pny:K (3.06) BS01 rna ? GO:0003723 ... O60783 35676484
    14 7pny:L (3.06) BS01 rna ? GO:0003723 ... P82914 35676484
    15 7pny:L (3.06) BS02 NAD ? GO:0003723 ... P82914 35676484
    16 7pny:M (3.06) BS01 rna ? GO:0003735 ... Q9Y3D3 35676484
    17 7pny:N (3.06) BS01 rna ? GO:0003735 ... Q9Y2R5 35676484
    18 7pny:O (3.06) BS01 rna ? GO:0003735 ... Q9Y676 35676484
    19 7pny:O (3.06) BS02 ZN ? GO:0003735 ... Q9Y676 35676484
    20 7pny:P (3.06) BS01 rna ? GO:0003735 ... Q9Y3D5 35676484
    21 7pny:P (3.06) BS02 FES ? GO:0003735 ... Q9Y3D5 35676484
    22 7pny:Q (3.06) BS01 rna ? GO:0003723 ... P82921 35676484
    23 7pny:S (3.06) BS01 rna ? GO:0003723 ... Q9Y3D9 35676484
    24 7pny:T (3.06) BS01 rna ? GO:0003735 ... P82663 35676484
    25 7pny:T (3.06) BS02 FES ? GO:0003735 ... P82663 35676484
    26 7pny:U (3.06) BS01 rna ? GO:0003723 ... Q9BYN8 35676484
    27 7pny:V (3.06) BS01 rna ? GO:0000049 ... Q92552 35676484
    28 7pny:X (3.06) BS01 rna ? GO:0003723 ... P51398 35676484
    29 7pny:X (3.06) BS02 ATP ? GO:0003723 ... P51398 35676484
    30 7pny:X (3.06) BS03 GDP ? GO:0003723 ... P51398 35676484
    31 7pny:Z (3.06) BS01 rna ? GO:0003735 ... Q9Y291 35676484
    32 7pny:a (3.06) BS01 rna ? GO:0005515 ... Q8N0V3 35676484
    33 7pny:b (3.06) BS01 rna 2.1.1.- GO:0005515 ... A6NJ78 35676484
    34 7pny:b (3.06) BS02 SAH 2.1.1.- GO:0005515 ... A6NJ78 35676484
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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