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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7o0u:AA (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    2 7o0u:AA (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    3 7o0u:AA (2.35) BS03 V7N N/A GO:0016020 ... N/A 35171663
    4 7o0u:AA (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    5 7o0u:AA (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    6 7o0u:AA (2.35) BS06 BCL N/A GO:0016020 ... N/A 35171663
    7 7o0u:AB (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    8 7o0u:AB (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    9 7o0u:AB (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    10 7o0u:AB (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    11 7o0u:AB (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    12 7o0u:AB (2.35) BS06 BCL N/A GO:0016020 ... N/A 35171663
    13 7o0u:AC (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    14 7o0u:AC (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    15 7o0u:AC (2.35) BS03 V7N N/A GO:0016020 ... N/A 35171663
    16 7o0u:AC (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    17 7o0u:AD (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    18 7o0u:AD (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    19 7o0u:AD (2.35) BS03 V7N N/A GO:0016020 ... N/A 35171663
    20 7o0u:AD (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    21 7o0u:AD (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    22 7o0u:AE (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    23 7o0u:AE (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    24 7o0u:AE (2.35) BS03 V7N N/A GO:0016020 ... N/A 35171663
    25 7o0u:AE (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    26 7o0u:AE (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    27 7o0u:AE (2.35) BS06 V7N N/A GO:0016020 ... N/A 35171663
    28 7o0u:AE (2.35) BS07 BCL N/A GO:0016020 ... N/A 35171663
    29 7o0u:AE (2.35) BS08 BCL N/A GO:0016020 ... N/A 35171663
    30 7o0u:AF (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    31 7o0u:AF (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    32 7o0u:AF (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    33 7o0u:AF (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    34 7o0u:AF (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    35 7o0u:AF (2.35) BS06 V7N N/A GO:0016020 ... N/A 35171663
    36 7o0u:AG (2.35) BS01 V7N N/A GO:0016020 ... N/A 35171663
    37 7o0u:AG (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    38 7o0u:AG (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    39 7o0u:AG (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    40 7o0u:AG (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    41 7o0u:AG (2.35) BS06 V7N N/A GO:0016020 ... N/A 35171663
    42 7o0u:AH (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    43 7o0u:AH (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    44 7o0u:AH (2.35) BS03 V7N N/A GO:0016020 ... N/A 35171663
    45 7o0u:AH (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    46 7o0u:AH (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    47 7o0u:AH (2.35) BS06 V7N N/A GO:0016020 ... N/A 35171663
    48 7o0u:AH (2.35) BS07 BCL N/A GO:0016020 ... N/A 35171663
    49 7o0u:AI (2.35) BS01 V7N N/A GO:0016020 ... N/A 35171663
    50 7o0u:AI (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    51 7o0u:AI (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    52 7o0u:AI (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    53 7o0u:AI (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    54 7o0u:AI (2.35) BS06 V7N N/A GO:0016020 ... N/A 35171663
    55 7o0u:AJ (2.35) BS01 V7N N/A GO:0016020 ... N/A 35171663
    56 7o0u:AJ (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    57 7o0u:AJ (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    58 7o0u:AJ (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    59 7o0u:AJ (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    60 7o0u:AJ (2.35) BS06 BCL N/A GO:0016020 ... N/A 35171663
    61 7o0u:AK (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    62 7o0u:AK (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    63 7o0u:AK (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    64 7o0u:AK (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    65 7o0u:AK (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    66 7o0u:AK (2.35) BS06 V7N N/A GO:0016020 ... N/A 35171663
    67 7o0u:AL (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    68 7o0u:AL (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    69 7o0u:AL (2.35) BS03 V7N N/A GO:0016020 ... N/A 35171663
    70 7o0u:AL (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    71 7o0u:AL (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    72 7o0u:AM (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    73 7o0u:AM (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    74 7o0u:AM (2.35) BS03 V7N N/A GO:0016020 ... N/A 35171663
    75 7o0u:AM (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    76 7o0u:AM (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    77 7o0u:AM (2.35) BS06 V7N N/A GO:0016020 ... N/A 35171663
    78 7o0u:AN (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    79 7o0u:AN (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    80 7o0u:AN (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    81 7o0u:AN (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    82 7o0u:AN (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    83 7o0u:AN (2.35) BS06 V7N N/A GO:0016020 ... N/A 35171663
    84 7o0u:AO (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    85 7o0u:AO (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    86 7o0u:AO (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    87 7o0u:AO (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    88 7o0u:AO (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    89 7o0u:AO (2.35) BS06 BCL N/A GO:0016020 ... N/A 35171663
    90 7o0u:AP (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    91 7o0u:AP (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    92 7o0u:AP (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    93 7o0u:AP (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    94 7o0u:AP (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    95 7o0u:AQ (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    96 7o0u:AQ (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    97 7o0u:AQ (2.35) BS03 V7N N/A GO:0016020 ... N/A 35171663
    98 7o0u:AQ (2.35) BS04 0V9 N/A GO:0016020 ... N/A 35171663
    99 7o0u:AQ (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    100 7o0u:AQ (2.35) BS06 V7N N/A GO:0016020 ... N/A 35171663
    101 7o0u:AQ (2.35) BS07 BCL N/A GO:0016020 ... N/A 35171663
    102 7o0u:AR (2.35) BS01 V7N N/A GO:0016020 ... N/A 35171663
    103 7o0u:AR (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    104 7o0u:AR (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    105 7o0u:AR (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    106 7o0u:AR (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    107 7o0u:AR (2.35) BS06 BCL N/A GO:0016020 ... N/A 35171663
    108 7o0u:AR (2.35) BS07 V7N N/A GO:0016020 ... N/A 35171663
    109 7o0u:AS (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    110 7o0u:AS (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    111 7o0u:AS (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    112 7o0u:AS (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    113 7o0u:AS (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    114 7o0u:AS (2.35) BS06 BCL N/A GO:0016020 ... N/A 35171663
    115 7o0u:AS (2.35) BS07 V7N N/A GO:0016020 ... N/A 35171663
    116 7o0u:AT (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    117 7o0u:AT (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    118 7o0u:AT (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    119 7o0u:AT (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    120 7o0u:AT (2.35) BS05 BCL N/A GO:0016020 ... N/A 35171663
    121 7o0u:AU (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    122 7o0u:AU (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    123 7o0u:AU (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    124 7o0u:AU (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    125 7o0u:AV (2.35) BS01 V7N N/A GO:0016020 ... N/A 35171663
    126 7o0u:AV (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    127 7o0u:AV (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    128 7o0u:AV (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    129 7o0u:AV (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    130 7o0u:AV (2.35) BS06 BCL N/A GO:0016020 ... N/A 35171663
    131 7o0u:AV (2.35) BS07 V7N N/A GO:0016020 ... N/A 35171663
    132 7o0u:AW (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    133 7o0u:AW (2.35) BS02 BCL N/A GO:0016020 ... N/A 35171663
    134 7o0u:AW (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    135 7o0u:AW (2.35) BS04 V7N N/A GO:0016020 ... N/A 35171663
    136 7o0u:AW (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    137 7o0u:AW (2.35) BS06 BCL N/A GO:0016020 ... N/A 35171663
    138 7o0u:AX (2.35) BS01 BCL N/A GO:0016020 ... N/A 35171663
    139 7o0u:AX (2.35) BS02 V7N N/A GO:0016020 ... N/A 35171663
    140 7o0u:AX (2.35) BS03 BCL N/A GO:0016020 ... N/A 35171663
    141 7o0u:AX (2.35) BS04 BCL N/A GO:0016020 ... N/A 35171663
    142 7o0u:AX (2.35) BS05 V7N N/A GO:0016020 ... N/A 35171663
    143 7o0u:AX (2.35) BS06 BCL N/A GO:0016020 ... N/A 35171663
    144 7o0u:BA (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    145 7o0u:BA (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    146 7o0u:BA (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    147 7o0u:BB (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    148 7o0u:BB (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    149 7o0u:BB (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    150 7o0u:BC (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    151 7o0u:BC (2.35) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    152 7o0u:BC (2.35) BS03 V7N ? GO:0005886 ... A0A143BHS8 35171663
    153 7o0u:BC (2.35) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    154 7o0u:BD (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    155 7o0u:BD (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    156 7o0u:BD (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    157 7o0u:BD (2.35) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    158 7o0u:BE (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    159 7o0u:BE (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    160 7o0u:BE (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    161 7o0u:BF (2.35) BS01 V7N ? GO:0005886 ... A0A143BHS8 35171663
    162 7o0u:BF (2.35) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    163 7o0u:BF (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    164 7o0u:BG (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    165 7o0u:BG (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    166 7o0u:BG (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    167 7o0u:BH (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    168 7o0u:BH (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    169 7o0u:BH (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    170 7o0u:BI (2.35) BS01 V7N ? GO:0005886 ... A0A143BHS8 35171663
    171 7o0u:BI (2.35) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    172 7o0u:BI (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    173 7o0u:BJ (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    174 7o0u:BJ (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    175 7o0u:BJ (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    176 7o0u:BK (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    177 7o0u:BK (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    178 7o0u:BK (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    179 7o0u:BL (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    180 7o0u:BL (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    181 7o0u:BL (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    182 7o0u:BM (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    183 7o0u:BM (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    184 7o0u:BM (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    185 7o0u:BN (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    186 7o0u:BN (2.35) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    187 7o0u:BN (2.35) BS03 V7N ? GO:0005886 ... A0A143BHS8 35171663
    188 7o0u:BN (2.35) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    189 7o0u:BO (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    190 7o0u:BO (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    191 7o0u:BO (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    192 7o0u:BP (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    193 7o0u:BP (2.35) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    194 7o0u:BP (2.35) BS03 V7N ? GO:0005886 ... A0A143BHS8 35171663
    195 7o0u:BP (2.35) BS04 BCL ? GO:0005886 ... A0A143BHS8 35171663
    196 7o0u:BQ (2.35) BS01 BCL ? GO:0005886 ... A0A143BHS8 35171663
    197 7o0u:BQ (2.35) BS02 V7N ? GO:0005886 ... A0A143BHS8 35171663
    198 7o0u:BQ (2.35) BS03 BCL ? GO:0005886 ... A0A143BHS8 35171663
    199 7o0u:BR (2.35) BS01 V7N ? GO:0005886 ... A0A143BHS8 35171663
    200 7o0u:BR (2.35) BS02 BCL ? GO:0005886 ... A0A143BHS8 35171663
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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