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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7nvx:0 (3.9) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 33902107
    2 7nvx:3 (3.9) BS01 ZN ? GO:0000082 ... P51948 33902107
    3 7nvx:3 (3.9) BS02 ZN ? GO:0000082 ... P51948 33902107
    4 7nvx:4 (3.9) BS01 ZN ? GO:0000438 ... Q13889 33902107
    5 7nvx:4 (3.9) BS02 ZN ? GO:0000438 ... Q13889 33902107
    6 7nvx:6 (3.9) BS01 ZN ? GO:0000438 ... Q13888 33902107
    7 7nvx:6 (3.9) BS02 ZN ? GO:0000438 ... Q13888 33902107
    8 7nvx:6 (3.9) BS03 ZN ? GO:0000438 ... Q13888 33902107
    9 7nvx:7 (3.9) BS01 dna 5.6.2.4 GO:0000112 ... P19447 33902107
    10 7nvx:7 (3.9) BS02 dna 5.6.2.4 GO:0000112 ... P19447 33902107
    11 7nvx:7 (3.9) BS03 peptide 5.6.2.4 GO:0000112 ... P19447 33902107
    12 7nvx:7 (3.9) BS04 peptide 5.6.2.4 GO:0000112 ... P19447 33902107
    13 7nvx:7 (3.9) BS05 peptide 5.6.2.4 GO:0000112 ... P19447 33902107
    14 7nvx:7 (3.9) BS06 ADP 5.6.2.4 GO:0000112 ... P19447 33902107
    15 7nvx:7 (3.9) BS07 BEF 5.6.2.4 GO:0000112 ... P19447 33902107
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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