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BioLiP
Download all results in tab-seperated text for 111 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ls1:A (3.3) BS01 rna ? GO:0003723 ... Q9CY58 34815424
    2 7ls1:A1 (3.3) BS01 rna ? GO:0000463 ... P14148 34815424
    3 7ls1:A1 (3.3) BS02 rna ? GO:0000463 ... P14148 34815424
    4 7ls1:A3 (3.3) BS01 rna ? GO:0002181 ... P62270 34815424
    5 7ls1:B1 (3.3) BS01 rna ? GO:0002181 ... P12970 34815424
    6 7ls1:B1 (3.3) BS02 rna ? GO:0002181 ... P12970 34815424
    7 7ls1:B3 (3.3) BS01 rna ? GO:0002181 ... Q9CZX8 34815424
    8 7ls1:C1 (3.3) BS01 rna ? GO:0002181 ... P51410 34815424
    9 7ls1:C3 (3.3) BS01 rna ? GO:0002181 ... P60867 34815424
    10 7ls1:D1 (3.3) BS01 rna ? GO:0000027 ... P86048 34815424
    11 7ls1:D1 (3.3) BS02 rna ? GO:0000027 ... P86048 34815424
    12 7ls1:D2 (3.3) BS01 rna ? GO:0002181 ... P62918 34815424
    13 7ls1:D2 (3.3) BS02 rna ? GO:0002181 ... P62918 34815424
    14 7ls1:E1 (3.3) BS01 rna ? GO:0000027 ... Q9CXW4 34815424
    15 7ls1:E1 (3.3) BS02 rna ? GO:0000027 ... Q9CXW4 34815424
    16 7ls1:E2 (3.3) BS01 rna ? GO:0002181 ... P27659 34815424
    17 7ls1:E3 (3.3) BS01 rna ? GO:0002181 ... P62267 34815424
    18 7ls1:F1 (3.3) BS01 rna ? GO:0001824 ... P47963 34815424
    19 7ls1:F1 (3.3) BS02 rna ? GO:0001824 ... P47963 34815424
    20 7ls1:F2 (3.3) BS01 rna ? GO:0002181 ... Q9D8E6 34815424
    21 7ls1:F2 (3.3) BS02 rna ? GO:0002181 ... Q9D8E6 34815424
    22 7ls1:F3 (3.3) BS01 rna ? GO:0002181 ... P62855 34815424
    23 7ls1:F3 (3.3) BS02 ZN ? GO:0002181 ... P62855 34815424
    24 7ls1:G1 (3.3) BS01 rna ? GO:0002181 ... Q9CR57 34815424
    25 7ls1:G2 (3.3) BS01 rna ? GO:0002181 ... P47962 34815424
    26 7ls1:G2 (3.3) BS02 rna ? GO:0002181 ... P47962 34815424
    27 7ls1:G3 (3.3) BS01 rna ? GO:0002181 ... P62858 34815424
    28 7ls1:H1 (3.3) BS01 rna ? GO:0002181 ... Q9CZM2 34815424
    29 7ls1:H1 (3.3) BS02 rna ? GO:0002181 ... Q9CZM2 34815424
    30 7ls1:H2 (3.3) BS01 rna ? GO:0002181 ... P47911 34815424
    31 7ls1:H3 (3.3) BS01 rna ? GO:0002181 ... P62274 34815424
    32 7ls1:H3 (3.3) BS02 ZN ? GO:0002181 ... P62274 34815424
    33 7ls1:H3 (3.3) BS03 MG ? GO:0002181 ... P62274 34815424
    34 7ls1:I2 (3.3) BS01 rna ? GO:0002181 ... P19253 34815424
    35 7ls1:I3 (3.3) BS01 rna ? GO:0001891 ... P68040 34815424
    36 7ls1:J2 (3.3) BS01 rna ? GO:0002181 ... Q9CPR4 34815424
    37 7ls1:J2 (3.3) BS02 rna ? GO:0002181 ... Q9CPR4 34815424
    38 7ls1:J3 (3.3) BS01 rna ? GO:0002181 ... P25444 34815424
    39 7ls1:K2 (3.3) BS01 rna ? GO:0002181 ... P35980 34815424
    40 7ls1:K3 (3.3) BS01 rna ? GO:0000082 ... P62754 34815424
    41 7ls1:L1 (3.3) BS01 rna ? GO:0002181 ... P53026 34815424
    42 7ls1:L1 (3.3) BS02 rna ? GO:0002181 ... P53026 34815424
    43 7ls1:L2 (3.3) BS01 rna ? GO:0002181 ... P84099 34815424
    44 7ls1:L2 (3.3) BS02 rna ? GO:0002181 ... P84099 34815424
    45 7ls1:L3 (3.3) BS01 rna ? GO:0002181 ... Q6ZWN5 34815424
    46 7ls1:M2 (3.3) BS01 rna ? GO:0002181 ... P62717 34815424
    47 7ls1:M2 (3.3) BS02 rna ? GO:0002181 ... P62717 34815424
    48 7ls1:M3 (3.3) BS01 rna ? GO:0002181 ... P63323 34815424
    49 7ls1:N2 (3.3) BS01 rna ? GO:0002181 ... O09167 34815424
    50 7ls1:N2 (3.3) BS02 rna ? GO:0002181 ... O09167 34815424
    51 7ls1:N3 (3.3) BS01 rna ? GO:0002181 ... P62301 34815424
    52 7ls1:N3 (3.3) BS02 rna ? GO:0002181 ... P62301 34815424
    53 7ls1:O2 (3.3) BS01 rna ? GO:0003723 ... P67984 34815424
    54 7ls1:O3 (3.3) BS01 rna ? GO:0000028 ... P62264 34815424
    55 7ls1:P2 (3.3) BS01 rna ? GO:0000122 ... P62830 34815424
    56 7ls1:P3 (3.3) BS01 rna ? GO:0002181 ... P62245 34815424
    57 7ls1:Q2 (3.3) BS01 rna ? GO:0000027 ... Q8BP67 34815424
    58 7ls1:Q2 (3.3) BS02 rna ? GO:0000027 ... Q8BP67 34815424
    59 7ls1:Q3 (3.3) BS01 rna ? GO:0002181 ... P62849 34815424
    60 7ls1:R2 (3.3) BS01 rna ? GO:0002181 ... P62751 34815424
    61 7ls1:R2 (3.3) BS02 rna ? GO:0002181 ... P62751 34815424
    62 7ls1:R3 (3.3) BS01 rna ? GO:0002181 ... P62852 34815424
    63 7ls1:S2 (3.3) BS01 rna ? GO:0002181 ... P61255 34815424
    64 7ls1:S2 (3.3) BS02 rna ? GO:0002181 ... P61255 34815424
    65 7ls1:S3 (3.3) BS01 rna ? GO:0003735 ... Q6ZWY3 34815424
    66 7ls1:T2 (3.3) BS01 rna ? GO:0002181 ... P61358 34815424
    67 7ls1:T3 (3.3) BS01 rna ? GO:0002181 ... P62862 34815424
    68 7ls1:U2 (3.3) BS01 rna ? GO:0002181 ... P14115 34815424
    69 7ls1:U3 (3.3) BS01 rna ? GO:0002181 ... P62983 34815424
    70 7ls1:U3 (3.3) BS02 ZN ? GO:0002181 ... P62983 34815424
    71 7ls1:V2 (3.3) BS01 rna ? GO:0002181 ... P47915 34815424
    72 7ls1:W2 (3.3) BS01 rna ? GO:0002181 ... P62889 34815424
    73 7ls1:X2 (3.3) BS01 rna ? GO:0002181 ... P62900 34815424
    74 7ls1:Y2 (3.3) BS01 rna ? GO:0002181 ... P62911 34815424
    75 7ls1:Z2 (3.3) BS01 rna ? GO:0002181 ... O55142 34815424
    76 7ls1:a2 (3.3) BS01 rna ? GO:0002181 ... Q9D1R9 34815424
    77 7ls1:b2 (3.3) BS01 rna ? GO:0000463 ... Q6ZWV7 34815424
    78 7ls1:b2 (3.3) BS02 rna ? GO:0000463 ... Q6ZWV7 34815424
    79 7ls1:c2 (3.3) BS01 rna ? GO:0002181 ... P47964 34815424
    80 7ls1:d2 (3.3) BS01 rna ? GO:0002181 ... Q9D823 34815424
    81 7ls1:d2 (3.3) BS02 rna ? GO:0002181 ... Q9D823 34815424
    82 7ls1:d2 (3.3) BS03 ZN ? GO:0002181 ... Q9D823 34815424
    83 7ls1:e2 (3.3) BS01 rna ? GO:0001501 ... Q9JJI8 34815424
    84 7ls1:f2 (3.3) BS01 rna ? GO:0002181 ... P62892 34815424
    85 7ls1:f2 (3.3) BS02 rna ? GO:0002181 ... P62892 34815424
    86 7ls1:g2 (3.3) BS01 rna ? GO:0002181 ... P62984 34815424
    87 7ls1:g2 (3.3) BS02 ZN ? GO:0002181 ... P62984 34815424
    88 7ls1:i2 (3.3) BS01 rna ? GO:0002181 ... P83882 34815424
    89 7ls1:i2 (3.3) BS02 rna ? GO:0002181 ... P83882 34815424
    90 7ls1:i2 (3.3) BS03 ZN ? GO:0002181 ... P83882 34815424
    91 7ls1:j (3.3) BS01 rna ? GO:0002181 ... P14869 34815424
    92 7ls1:j2 (3.3) BS01 rna ? GO:0002181 ... P61514 34815424
    93 7ls1:j2 (3.3) BS02 ZN ? GO:0002181 ... P61514 34815424
    94 7ls1:k (3.3) BS01 rna ? GO:0002181 ... P35979 34815424
    95 7ls1:k2 (3.3) BS01 rna ? GO:0002181 ... P41105 34815424
    96 7ls1:m (3.3) BS01 rna 3.6.5.- GO:0002244 ... P58252 34815424
    97 7ls1:m (3.3) BS02 rna 3.6.5.- GO:0002244 ... P58252 34815424
    98 7ls1:m (3.3) BS03 GDP 3.6.5.- GO:0002244 ... P58252 34815424
    99 7ls1:o2 (3.3) BS01 rna ? GO:0000028 ... P14206 34815424
    100 7ls1:p2 (3.3) BS01 rna ? GO:0002181 ... P97351 34815424
    101 7ls1:q2 (3.3) BS01 rna 4.2.99.18 GO:0000977 ... P62908 34815424
    102 7ls1:r2 (3.3) BS01 rna ? GO:0002181 ... P62702 34815424
    103 7ls1:s2 (3.3) BS01 rna ? GO:0002181 ... P97461 34815424
    104 7ls1:t (3.3) BS01 rna ? GO:0001843 ... P62082 34815424
    105 7ls1:u (3.3) BS01 rna ? GO:0002181 ... P62242 34815424
    106 7ls1:u (3.3) BS02 rna ? GO:0002181 ... P62242 34815424
    107 7ls1:v2 (3.3) BS01 rna ? GO:0002181 ... P63325 34815424
    108 7ls1:w2 (3.3) BS01 rna ? GO:0002181 ... P62281 34815424
    109 7ls1:x2 (3.3) BS01 rna ? GO:0000028 ... P62843 34815424
    110 7ls1:y2 (3.3) BS01 rna ? GO:0002181 ... P14131 34815424
    111 7ls1:z2 (3.3) BS01 rna ? GO:0002181 ... P63276 34815424
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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