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BioLiP
Download all results in tab-seperated text for 156 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7lhd:B (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    2 7lhd:BA (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    3 7lhd:BB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    4 7lhd:BC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    5 7lhd:BD (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    6 7lhd:BE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    7 7lhd:BF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    8 7lhd:BG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    9 7lhd:BH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    10 7lhd:BI (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    11 7lhd:BJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    12 7lhd:BK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    13 7lhd:BL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    14 7lhd:BM (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    15 7lhd:BN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    16 7lhd:CB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    17 7lhd:CC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    18 7lhd:CD (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    19 7lhd:CE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    20 7lhd:CF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    21 7lhd:CG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    22 7lhd:CH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    23 7lhd:CI (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    24 7lhd:CJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    25 7lhd:CK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    26 7lhd:CM (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    27 7lhd:CN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    28 7lhd:D (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    29 7lhd:DC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    30 7lhd:DD (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    31 7lhd:DE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    32 7lhd:DF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    33 7lhd:DI (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    34 7lhd:DJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    35 7lhd:DL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    36 7lhd:DN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    37 7lhd:EA (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    38 7lhd:EB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    39 7lhd:EC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    40 7lhd:ED (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    41 7lhd:EE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    42 7lhd:EF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    43 7lhd:EG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    44 7lhd:EH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    45 7lhd:EI (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    46 7lhd:EJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    47 7lhd:EK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    48 7lhd:EL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    49 7lhd:EN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    50 7lhd:FA (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    51 7lhd:FB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    52 7lhd:FC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    53 7lhd:FD (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    54 7lhd:FE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    55 7lhd:FF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    56 7lhd:FG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    57 7lhd:FH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    58 7lhd:FI (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    59 7lhd:FJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    60 7lhd:FK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    61 7lhd:FL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    62 7lhd:FM (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    63 7lhd:FN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    64 7lhd:GA (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    65 7lhd:GB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    66 7lhd:GC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    67 7lhd:GD (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    68 7lhd:GE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    69 7lhd:GF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    70 7lhd:GG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    71 7lhd:GH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    72 7lhd:GI (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    73 7lhd:GJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    74 7lhd:GK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    75 7lhd:GL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    76 7lhd:GM (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    77 7lhd:GN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    78 7lhd:HA (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    79 7lhd:HB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    80 7lhd:HC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    81 7lhd:HD (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    82 7lhd:HE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    83 7lhd:HF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    84 7lhd:HG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    85 7lhd:HJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    86 7lhd:HK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    87 7lhd:HL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    88 7lhd:HM (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    89 7lhd:HN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    90 7lhd:IC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    91 7lhd:ID (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    92 7lhd:IE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    93 7lhd:IF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    94 7lhd:IG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    95 7lhd:IH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    96 7lhd:II (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    97 7lhd:IJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    98 7lhd:IK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    99 7lhd:IL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    100 7lhd:IN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    101 7lhd:JA (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    102 7lhd:JB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    103 7lhd:JC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    104 7lhd:JD (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    105 7lhd:JF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    106 7lhd:JG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    107 7lhd:JH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    108 7lhd:JJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    109 7lhd:JK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    110 7lhd:JL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    111 7lhd:JM (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    112 7lhd:JN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    113 7lhd:KB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    114 7lhd:KC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    115 7lhd:KE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    116 7lhd:KF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    117 7lhd:KG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    118 7lhd:KH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    119 7lhd:KJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    120 7lhd:KK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    121 7lhd:KL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    122 7lhd:KM (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    123 7lhd:KN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    124 7lhd:LA (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    125 7lhd:LB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    126 7lhd:LC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    127 7lhd:LD (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    128 7lhd:LE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    129 7lhd:LF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    130 7lhd:LG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    131 7lhd:LH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    132 7lhd:LI (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    133 7lhd:LJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    134 7lhd:LK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    135 7lhd:LL (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    136 7lhd:LN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    137 7lhd:M (4.6) BS01 rna ? GO:0031640 ... Q8LTE2 35215818
    138 7lhd:MA (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    139 7lhd:MB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    140 7lhd:MC (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    141 7lhd:MD (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    142 7lhd:MF (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    143 7lhd:MG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    144 7lhd:MH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    145 7lhd:MJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    146 7lhd:MK (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    147 7lhd:ML (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    148 7lhd:MM (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    149 7lhd:MN (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    150 7lhd:NA (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    151 7lhd:NB (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    152 7lhd:ND (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    153 7lhd:NE (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    154 7lhd:NG (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    155 7lhd:NH (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    156 7lhd:NJ (4.6) BS01 rna ? GO:0003723 ... P03615 35215818
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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