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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7f0d:0 (3.3) BS01 rna ? GO:0003735 ... A5U121 34935599
    2 7f0d:1 (3.3) BS01 rna ? GO:0003735 ... A5U019 34935599
    3 7f0d:2 (3.3) BS01 rna ? GO:0003735 ... A5U9Q2 34935599
    4 7f0d:3 (3.3) BS01 rna ? GO:0003735 ... A5U2Z9 34935599
    5 7f0d:4 (3.3) BS01 rna ? GO:0003735 ... A5U8D7 34935599
    6 7f0d:C (3.3) BS01 rna ? GO:0002181 ... A5U090 34935599
    7 7f0d:D (3.3) BS01 rna ? GO:0003735 ... A5U087 34935599
    8 7f0d:E (3.3) BS01 rna ? GO:0003735 ... A5U088 34935599
    9 7f0d:F (3.3) BS01 rna ? GO:0000049 ... A5U0A2 34935599
    10 7f0d:F (3.3) BS02 rna ? GO:0000049 ... A5U0A2 34935599
    11 7f0d:G (3.3) BS01 rna ? GO:0002181 ... A5U0A5 34935599
    12 7f0d:H (3.3) BS01 rna ? GO:0003735 ... A5TYC7 34935599
    13 7f0d:J (3.3) BS01 rna ? GO:0003729 ... A5U8B9 34935599
    14 7f0d:K (3.3) BS01 rna ? GO:0003735 ... A5U0A0 34935599
    15 7f0d:L (3.3) BS01 rna ? GO:0003735 ... A5U0A9 34935599
    16 7f0d:M (3.3) BS01 rna ? GO:0000049 ... A5U094 34935599
    17 7f0d:N (3.3) BS01 rna ? GO:0003735 ... A5U8D2 34935599
    18 7f0d:O (3.3) BS01 rna ? GO:0003735 ... A5U0A6 34935599
    19 7f0d:O (3.3) BS02 rna ? GO:0003735 ... A5U0A6 34935599
    20 7f0d:P (3.3) BS01 rna ? GO:0003735 ... A5U6Q9 34935599
    21 7f0d:Q (3.3) BS01 rna ? GO:0000027 ... A5U300 34935599
    22 7f0d:R (3.3) BS01 rna ? GO:0003723 ... A5U5D8 34935599
    23 7f0d:S (3.3) BS01 rna ? GO:0003735 ... A5U092 34935599
    24 7f0d:T (3.3) BS01 rna ? GO:0000027 ... A5U089 34935599
    25 7f0d:U (3.3) BS01 rna ? GO:0003723 ... A5U0A1 34935599
    26 7f0d:V (3.3) BS01 rna ? GO:0003723 ... A5U158 34935599
    27 7f0d:V (3.3) BS02 rna ? GO:0003723 ... A5U158 34935599
    28 7f0d:W (3.3) BS01 rna ? GO:0003735 ... A5U5D7 34935599
    29 7f0d:W (3.3) BS02 rna ? GO:0003735 ... A5U5D7 34935599
    30 7f0d:X (3.3) BS01 rna ? GO:0003735 ... A5U6Y6 34935599
    31 7f0d:Y (3.3) BS01 rna ? GO:0003735 ... A5U095 34935599
    32 7f0d:Z (3.3) BS01 rna ? GO:0003735 ... A5U0A8 34935599
    33 7f0d:Z (3.3) BS02 rna ? GO:0003735 ... A5U0A8 34935599
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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