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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7duk:B (3.6) BS01 rna ? GO:0003735 ... P80371 N/A
    2 7duk:B (3.6) BS02 MG ? GO:0003735 ... P80371 N/A
    3 7duk:B (3.6) BS03 MG ? GO:0003735 ... P80371 N/A
    4 7duk:C (3.6) BS01 rna ? GO:0003676 ... P80372 N/A
    5 7duk:C (3.6) BS02 MG ? GO:0003676 ... P80372 N/A
    6 7duk:C (3.6) BS03 MG ? GO:0003676 ... P80372 N/A
    7 7duk:C (3.6) BS04 MG ? GO:0003676 ... P80372 N/A
    8 7duk:D (3.6) BS01 rna ? GO:0003723 ... P80373 N/A
    9 7duk:E (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 N/A
    10 7duk:F (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 N/A
    11 7duk:G (3.6) BS01 rna ? GO:0000028 ... P17291 N/A
    12 7duk:H (3.6) BS01 rna ? GO:0003735 ... P0DOY9 N/A
    13 7duk:I (3.6) BS01 rna ? GO:0000049 ... P80374 N/A
    14 7duk:J (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 N/A
    15 7duk:J (3.6) BS02 MG ? GO:0000049 ... Q5SHN7 N/A
    16 7duk:K (3.6) BS01 rna ? GO:0003735 ... P80376 N/A
    17 7duk:L (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 N/A
    18 7duk:M (3.6) BS01 rna ? GO:0000049 ... P80377 N/A
    19 7duk:N (3.6) BS01 rna ? GO:0003735 ... P0DOY6 N/A
    20 7duk:N (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 N/A
    21 7duk:O (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 N/A
    22 7duk:P (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 N/A
    23 7duk:Q (3.6) BS01 rna ? GO:0003735 ... P0DOY7 N/A
    24 7duk:Q (3.6) BS02 MG ? GO:0003735 ... P0DOY7 N/A
    25 7duk:R (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 N/A
    26 7duk:S (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 N/A
    27 7duk:T (3.6) BS01 rna ? GO:0003723 ... P80380 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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